PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_C12DC1916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 809aa MW: 92072.4 Da PI: 5.6685 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.9 | 9.2e-20 | 57 | 143 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +fY +Y+ + GF ++++++++ +g +++tf Csk g+++ ++ ++ ++ t+tgCkak+ vk + +++wev+ leleHnH Traes_7BL_C12DC1916.1 57 QFYVAYGCRSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKIIVKDAHfQNRWEVIVLELEHNH 140 6****************99988..9999**************99877..77788889***************9*************** PP FAR1 88 ela 90 +l Traes_7BL_C12DC1916.1 141 PLD 143 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-17 | 57 | 144 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.7E-19 | 263 | 353 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.3E-7 | 541 | 573 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.347 | 541 | 577 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.9E-5 | 552 | 579 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MEEEGYSTES SNEGDVQEDG DKEKSLAEGD VFKPVDMDPE WIPKVGMVFD SEEDAFQFYV 60 AYGCRSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV 120 KDAHFQNRWE VIVLELEHNH PLDPGSIKYK KNLENIPFSL NPPRLSEAPQ SSSVVGHSSS 180 FGDSGIPSSA QIEIKTKIDR NRKLKLAEGD LEALVSFFND MQDRNPCFFH SLDMNEQGQL 240 RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS 300 LGAYVWLFDT CLRCMNAMSP PSIITNYCHD VAIAVKKVFP NSRHRFCLRH ILNELPEKLA 360 GMENKDEMIS TFSTLAYDSV TALDFDKEWQ EMTHQFQLEG NEWLSKLYEV RAQWAPAYVK 420 DFFWAGMSVT DRSDSATDYF DGWLTSGTSV KMFVEQYEAA VRTKLEKETY EDLQSSQMRP 480 QLMTGLPVEE QAAKMYTMEI FQTFLNELGH SFHCNYSILD RSDSVVTYIL SEHVNQTKVD 540 FKVAYDNAED DIWCFCRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS 600 MSRDVSLSTQ ELGGYDDLYK LGHQYFAEVV ELGSVNSESK DYALSVMREI RDKVISYEKS 660 LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD 720 TLKKKTKRAY NKRRNATANN LCTTVTATDS ITESANVQED QVNEGWPLTS SGAPDTFPYG 780 VETISFDLTQ YNNAPSFHWP ESSSRSQLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372473 | 0.0 | AK372473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3002N21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171637.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_020201233.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_020201234.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | M8ASV4 | 0.0 | M8ASV4_TRIUA; Protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | Traes_7BL_C12DC1916.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-109 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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