PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_998EC9F74.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 711aa    MW: 77072.4 Da    PI: 6.5916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_998EC9F74.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-152468147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Traes_7BL_998EC9F74.2 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
PfamPF002491.4E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-82464IPR009057Homeodomain-like
CDDcd001671.02E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP  120
KSSVSLSNSN AEMASNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS  180
SNHGVSGGIE PTKTENKDIA TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYGRSHE  240
DCLDNSMKHM QLKPNTVETT YTGQHAASAP LYQMNKTEAT GAPDPGTEGS HPDQTSDQAG  300
GANGSMDCIH PTLPVDPKIG SSSTAQPFPH NYAGFAPTMQ CHCNQDANRS SLNMSSTFSN  360
MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA ENAQGRHIGS PPSMASVVAA  420
TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPIADVQ RATENCPVDN APKECQVAQE  480
QGQPEAMIVG ASSGSDESGK GEVSPHTDKV ETTPPTGAET SDAFGNKKKQ DRSSCGSNTP  540
SSSDVEAEHV PENQDQANDK TQQACCSNSS AGDMNHRRFR NISSTNDSWK EVSEEGRMAF  600
DKLFSRGKLP QSFSPPQAEG LKVVPRGEQD EATTVTVDLN KSAAVIDHEL DTLVGPRAAT  660
FPIELSHLNM KSRRTGFKPY KRCSVEAKEN RVPAADEVGT KRIRLDSEPS T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2226060.0HQ222606.1 Triticum aestivum LHY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195458.10.0protein LHY
RefseqXP_020195459.10.0protein LHY
RefseqXP_020195460.10.0protein LHY
RefseqXP_020195461.10.0protein LHY
TrEMBLA0A3B6SH230.0A0A3B6SH23_WHEAT; Uncharacterized protein
STRINGTraes_7BL_998EC9F74.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.17e-41circadian clock associated 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]