PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_8492576A6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 399aa MW: 45682 Da PI: 10.0732 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.4 | 2e-12 | 116 | 195 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ + GF +r +ks+ + n++ +++ vC + gk+ e+++ + r++C a +++ ++kd+ w++++ + HnH+ Traes_7BL_8492576A6.1 116 DFYNLYSWKKGFGIRYRKSRLN-VNRTKCMQEIVCGCAGKPIVENTR---------SCRCECPALIRLPRTKDNGWYIAEHRDGHNHA 193 6****************99998.555678899*******99887555.........99****************************** PP FAR1 89 la 90 l+ Traes_7BL_8492576A6.1 194 LS 195 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-9 | 116 | 195 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-14 | 317 | 375 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MKVTGQWSPF GSQWPRRRRF LLQPRPGQVR XXXXXPEASG GDKAQGSEHS IEQLDPKTPG 60 WMQRVRVGAA APGRPPCADR VTTLEKTVRE FAEHPRDIVM MPKIGTSFDT LGEAYDFYNL 120 YSWKKGFGIR YRKSRLNVNR TKCMQEIVCG CAGKPIVENT RSCRCECPAL IRLPRTKDNG 180 WYIAEHRDGH NHALSQTYGQ TIHWPSHKHI DVYSKDLVKQ LRQNNVNLSK VYSIIGSFFG 240 KMENVPFTKR ALRNLCGKIS REQSEDDVRK TMEVFHDLCS KDPQFTYRVQ ADKEGRISNL 300 MWATGNSRLQ YNFFGDVITF DTTYRTNLYD MPFGLFVGVN NHFQSIILAG VLVRHETEET 360 FEWVFSEFVR IMGGRTVGLA RGLPSLGGVR RALLALART |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX295577 | 0.0 | JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196226.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A2X0SDX7 | 0.0 | A0A2X0SDX7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_8492576A6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-36 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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