PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_681D33525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 207aa MW: 21925.4 Da PI: 8.5747 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 7 | 32 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Traes_7BL_681D33525.1 7 YKGRHCKKFYTEEGCPYGDACTFLHD 32 78888********************7 PP | |||||||
2 | zf-CCCH | 44.4 | 2.7e-14 | 86 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Traes_7BL_681D33525.1 86 WKTRICNKWEMTGYCPFGSKCHFAHG 111 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-9 | 5 | 34 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-8 | 5 | 34 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-17 | 82 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-10 | 82 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-11 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
SVSGRAYKGR HCKKFYTEEG CPYGDACTFL HDEQSKARES VAISLSPSVG GGSYNSATAA 60 AAPPNGPATA AAASPNGPTI LKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG 120 GLVDIDGRDI ASTPDSKQAT ASSKLPVETA AASTAVPPHA DVYHLGSQSQ RSALASQRSG 180 QLQRPIQKWK GPDKISRIYG DWIDETD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373307 | 0.0 | AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198349.1 | 1e-134 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-104 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A3B6SJG1 | 1e-137 | A0A3B6SJG1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_681D33525.1 | 1e-152 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-64 | C3H family protein |
Publications ? help Back to Top | |||
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