PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_6183FA9D4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25674.2 Da PI: 6.2491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.3e-14 | 125 | 211 | 3 | 87 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 k+lt+sdv + gr+vlpkk ae+ + ++ ++ l++ d +W++k+++ ++ks++y+l ++eFvk +gL++gD ++++ Traes_7BL_6183FA9D4.1 125 KELTKSDVANVGRIVLPKKDAEASlpPLCERDPVILQMDDmVLPITWKFKYRFwpNNKSRMYILD-STSEFVKTHGLQAGDALIIY-- 209 899******************98888666666766777775555*******99777777777777.9****************998.. PP SS CS B3 86 gr 87 ++ Traes_7BL_6183FA9D4.1 210 KN 211 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-16 | 122 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.67E-21 | 122 | 220 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 122 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.9E-8 | 123 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-11 | 125 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLNKNAYSYY PAPNQEHTHH FSLDNNQAKD PGSIPSFGIE SFNTTSLAPN MSAHMPPMEG 60 PLPTKEPEAP EDMPARVATI KDEMDARNGV ELKCETVDAL PELKQGHESC ASKFNSGEYQ 120 VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPIT WKFKYRFWPN 180 NKSRMYILDS TSEFVKTHGL QAGDALIIYK NPVPGKYIVR GEKAIQQTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-33 | 112 | 218 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-33 | 112 | 218 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373902 | 0.0 | AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169706.1 | 1e-169 | B3 domain-containing protein IDEF1-like | ||||
Swissprot | Q6Z1Z3 | 1e-103 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | A0A3B6SGK4 | 1e-169 | A0A3B6SGK4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446YJQ2 | 1e-169 | A0A446YJQ2_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453S423 | 1e-170 | A0A453S423_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BL_6183FA9D4.1 | 1e-172 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-35 | B3 family protein |