PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_1ED33FA5D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 376aa    MW: 41869 Da    PI: 10.1686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_1ED33FA5D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-24221512127
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWka 85 
                            p+G++F P+d el+ + L+  ++g++  ++l +++++v+i +++P +L +++ka+++  ++yfFs+r+       r++r tk+g Wka
  Traes_7BL_1ED33FA5D.1  22 PQGYHFVPSDLELI-RLLEDIIAGRPlpHPLPTIFRNVRIRDYHPAELYERYKAHKEagSIYFFSEREFPGGARVRPRRFTKDGWWKA 108
                            89************.99********9766667789*************8655554444477********9999*************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyr 127
                            +g  +++ + +g +vg k tLvfy++   ++ g+ktdW ++ey+
  Traes_7BL_1ED33FA5D.1 109 SGGGESLRR-RGLTVGSKLTLVFYDKkpGQKVGVKTDWAIKEYT 151
                            ***999998.999***********6523567799*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3113169IPR003441NAC domain
PROSITE profilePS5100528.85121170IPR003441NAC domain
PfamPF023651.6E-1222151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEKMQKAVAV VNHLWWNRHG FPQGYHFVPS DLELIRLLED IIAGRPLPHP LPTIFRNVRI  60
RDYHPAELYE RYKAHKEAGS IYFFSEREFP GGARVRPRRF TKDGWWKASG GGESLRRRGL  120
TVGSKLTLVF YDKKPGQKVG VKTDWAIKEY TKIVDKKKAE EMALYRLYKM NKPANAKHPT  180
QEDENTPNST WANEEAPPPS PPHPTFSQAQ AGQTHDYHNH YYFGVXXXXX XGDAGRRPHG  240
ANGFFAGRPN IPAAAQRRPV HRRAQVLGCA AGDGPVSGVV GTSSRCAWPA DICCAFQLPR  300
NCSRRRALWL PRNNHRTNED AAPAGVCRAL CLPGNNRPAE DAAPAGVCRA LCLPGNHRPA  360
EDAAPTAGCS GRLPGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-122115015138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189609.13e-82NAC transcription factor NAM-1-like
TrEMBLA0A3B6SFI41e-164A0A3B6SFI4_WHEAT; Uncharacterized protein
STRINGTraes_7BL_1ED33FA5D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-10NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]