PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_C9DF68E53.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 451aa MW: 47844.2 Da PI: 9.0109 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.2e-30 | 242 | 301 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg Hnh+ Traes_7AS_C9DF68E53.2 242 MNDGCQWRKYGQKISKGNPCPRAYYRCTIAtGCPVRKQVQRCAEDMSILITTYEGAHNHP 301 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 227 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-27 | 235 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.921 | 237 | 303 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-36 | 242 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 243 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MIKGDQRQLG GHEDRLKDQT FMLVLQMGDD HRASDGKFFR FLQNQSSAKK EAQEDKIAST 60 RAEMGEVRKE NERLKTMLSR MVEDHRSLQK QFDVLHQQGR GKNLAMGSPE HTSSADGVKD 120 PRFVSLRLGT SASTSRQDMG EEIRTGTNNA DGKCISLGLS SGKAIGAAGQ SEMKVQPDVL 180 TLSPGGSSED DAATETTTTS SKVPKNPRST GGGAEAEEEV AQQPLAKKAR VSVRARCDTP 240 TMNDGCQWRK YGQKISKGNP CPRAYYRCTI ATGCPVRKQV QRCAEDMSIL ITTYEGAHNH 300 PLSPSAAAMA STTSAAASML MSGSSTSLGF PSVASSLHGL RFGLPAATTF DPSSHLSGRP 360 FFLPAAAGAS ISATPSYPTI TLDLTSQTAS QQAFSLSNTN RFSSSFPDSH GHSSSAGRYP 420 STNFSFSGSG ASSLPGATAW PAGVGSYLSY G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 229 | 304 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199175.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A446X175 | 0.0 | A0A446X175_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AS_C9DF68E53.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 1e-55 | WRKY DNA-binding protein 61 |
Publications ? help Back to Top | |||
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