PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_B71C74E86.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 524aa    MW: 60550.4 Da    PI: 8.2281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_B71C74E86.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11351151399
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++ +++p + +++++ +     +++le+++g    + +   k  ++ ++t GW++Fv   +L+ gD ++F+++g+s+f  +v +f+k
  Traes_7AS_B71C74E86.1  35 RDEMIIPEEIVQRFKRD--ILGEIKLETRNGDNHAIVV--AKIEEKRIFTVGWRQFVANYDLQIGDLLMFRYKGNSQF--NVIIFDK 115
                            56799******999766..4458***************..888888899*************************9*99..8888875 PP
2B334.73.1e-111862691699
                            EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + +p   +++++g+   +++++le+++ rs+++ ++       + ++ v++ GW +Fv+  gL+ gD++vF ++g+s+f   v +f+k
  Traes_7AS_B71C74E86.1 186 MDIPEGILQRFKGE--FPREIKLETQNRRSYKIGVTEnkldICYNQKLVFSVGWGKFVETFGLQMGDTIVFIYNGNSQF--SVIIFDK 269
                            66777777777766..6789***************6544532234459***************************9999..8888876 PP
3B345.41.5e-14427516197
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+ v+ + +v +   l++p+ +a+++ g++++   +    + g +W+v++   +++g   l+ GWk+Fv+ n+Lk gD+++F+l ++ 
  Traes_7AS_B71C74E86.1 427 FVAVMYKCNVESPFFLTFPNYYAQKYLGEEAR---MH-LELLGVKWQVRF--PNNRGDKKLKHGWKQFVQGNNLKMGDICLFELLSN- 507
                            5667777788888999**********666443...33.34678*******..99999999***********************9985. PP

                            EE..EEEEE CS
                     B3  89 efelvvkvf 97 
                            + ++vv v+
  Traes_7AS_B71C74E86.1 508 QSTMVVYVI 516
                            555788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-1621115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1621115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1123114No hitNo description
PROSITE profilePS5086310.88423116IPR003340B3 DNA binding domain
SMARTSM010193.2E-526116IPR003340B3 DNA binding domain
PfamPF023622.7E-936114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-17168270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-16168270IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.884171270IPR003340B3 DNA binding domain
SMARTSM010190.0014173270IPR003340B3 DNA binding domain
PfamPF023622.0E-8186269IPR003340B3 DNA binding domain
CDDcd100172.64E-10196268No hitNo description
Gene3DG3DSA:2.40.330.105.6E-18419515IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17422515IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-14426517No hitNo description
PROSITE profilePS5086312.746427519IPR003340B3 DNA binding domain
SMARTSM010194.7E-9427519IPR003340B3 DNA binding domain
PfamPF023621.1E-13427517IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MCTSCECCKR RDEYYYRNLD DEKKYFLVLL IGDFRDEMII PEEIVQRFKR DILGEIKLET  60
RNGDNHAIVV AKIEEKRIFT VGWRQFVANY DLQIGDLLMF RYKGNSQFNV IIFDKLGREK  120
ASSVVLDPFI PRVQDRGNEA HEIGSSEKMD VQCGRCNNWL EYHYADLDNE NKYFLMLMMG  180
DFQYEMDIPE GILQRFKGEF PREIKLETQN RRSYKIGVTE NKLDICYNQK LVFSVGWGKF  240
VETFGLQMGD TIVFIYNGNS QFSVIIFDKH GREKALSVIV DPVPPPVQER RPYGTDIVKS  300
SHFYPQPMQR QPFIVVNGLP VESPPIEGQW RAQLEMDKSC QGSRAAINTP PSESSGLRGS  360
LSFEHGQGVR DVPVSSNIVK RKAKLSSSQK EQLRDGYITA HKTKLTLAQK DVVKQKVQSL  420
ESKISIFVAV MYKCNVESPF FLTFPNYYAQ KYLGEEARMH LELLGVKWQV RFPNNRGDKK  480
LKHGWKQFVQ GNNLKMGDIC LFELLSNQST MVVYVIPAND ANVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186790.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_020186791.10.0putative B3 domain-containing protein Os08g0325100 isoform X2
SwissprotQ6Z0D98e-52Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A3B6RCP70.0A0A3B6RCP7_WHEAT; Uncharacterized protein
STRINGTraes_7AS_B71C74E86.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]