PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_715C6A2D6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26931.6 Da PI: 8.5838 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.3 | 4.3e-17 | 30 | 102 | 1 | 74 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 +fYn+YAk GFsvrk++ k++ g ++r ++Cskeg+r+ ++ + ++++r++ra +r+gC+a+l+++++ ++ Traes_7AS_715C6A2D6.2 30 EFYNRYAKAKGFSVRKANVKNK--GGIRIQRLYMCSKEGYRSLKNFErSNRKRKPRALSRCGCDAQLQIELNMEN 102 6****************98877..8999*************9988775789999****************98644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-15 | 30 | 102 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-23 | 103 | 182 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDAHHVSIEE TEEYYTVVSQ TFTSEEQGFE FYNRYAKAKG FSVRKANVKN KGGIRIQRLY 60 MCSKEGYRSL KNFERSNRKR KPRALSRCGC DAQLQIELNM ENRVNKYNLP FVPFIGLNHH 120 RSTVVFGVGI VSDETVASYK WLLHSFLEAM HQNHPRSVIT DGDHAMARAI LQVWPNTDHR 180 LATSKGEERD IRLRWVMILV DGQQLECTHM GEHLFSSTLE ATPGACRTCL PPEP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-76 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169082.1 | 1e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020169083.1 | 1e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020169084.1 | 1e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020169085.1 | 1e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | Q7X8F3 | 3e-44 | Q7X8F3_ORYSJ; OSJNBa0041M21.10 protein | ||||
STRING | Traes_7AS_715C6A2D6.2 | 1e-178 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 5e-19 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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