PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_2EE7C2628.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25495.4 Da PI: 10.2901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.6e-08 | 1 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 v+ +G g+W++ + g+ R++k+c++rw +yl Traes_7AS_2EE7C2628.11 1 VRAHGEGCWRSLPGAAGLLRCGKSCRLRWINYL 33 788**************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.3e-18 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++ Traes_7AS_2EE7C2628.11 39 RGNFTRDEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 83 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 0.00281 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 9.663 | 1 | 33 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 1 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 1 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.8E-22 | 20 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.15 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-17 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 39 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 41 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.33E-13 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
VRAHGEGCWR SLPGAAGLLR CGKSCRLRWI NYLRPDLKRG NFTRDEDDLI VKLHSLLGNK 60 WSLIAARLPG RTDNEIKNYW NTHIRRKLLG RGIDPVTHRP LTHAASATTV SFLHPAEPPK 120 TQPATELSKP PRCPDLNLDL CISLPFQQEE ERPPARACAK PVKMEQLQQG GGGLCFRXVK 180 MEQLQQGGGG LCFRCSILRV RGAATECSCG SNFLGLRAGM LDFRGLRMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-21 | 20 | 88 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358405 | 0.0 | AK358405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163624.1 | 1e-133 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 1e-88 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A3B6RIQ9 | 1e-149 | A0A3B6RIQ9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AS_2EE7C2628.11 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 5e-70 | myb domain protein 7 |
Publications ? help Back to Top | |||
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