PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AS_0437CF0AD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 67aa MW: 7940.87 Da PI: 4.7562 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.8 | 2.6e-11 | 25 | 66 | 1 | 42 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA e GFsvrks+ + n+ i+ r+ vCs++g+re Traes_7AS_0437CF0AD.1 25 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFRE 66 6***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-9 | 25 | 66 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
ASDESMFEYV NVVSKMFDSE AEGYEFYNKY ALEKGFSVRK SYVEWDGSNK YIILRKIVCS 60 RQGFRED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-106 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188780.1 | 5e-39 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A452XR33 | 4e-37 | A0A452XR33_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453DSV9 | 4e-37 | A0A453DSV9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4BL_0437CF0AD.1 | 2e-41 | (Triticum aestivum) | ||||
STRING | Traes_4BL_0437CF0AD1.1 | 2e-41 | (Triticum aestivum) | ||||
STRING | Traes_6AL_B082ABBFC.1 | 2e-41 | (Triticum aestivum) | ||||
STRING | Traes_7AS_0437CF0AD.1 | 2e-41 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-07 | FAR1 family protein |
Publications ? help Back to Top | |||
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