PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_C0DB55E98.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 25721.3 Da PI: 6.0361 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.1e-14 | 125 | 212 | 3 | 87 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkl 84 k+lt+sdv + gr+vlpkk ae+ + ++ ++ l++ d +W++k++ ++ks++y+l ++eFvk +gL++gD ++++ Traes_7AL_C0DB55E98.2 125 KELTKSDVANVGRIVLPKKDAEASlpPLCERDPVILQMDDmVLPITWKFKYSRfwpNNKSRMYILD-STSEFVKTHGLQAGDALIIY- 210 899******************98888666666766777775555*******666788888778777.9****************998. PP -SS CS B3 85 dgr 87 ++ Traes_7AL_C0DB55E98.2 211 -KN 212 .44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.27E-19 | 122 | 221 | No hit | No description |
SuperFamily | SSF101936 | 1.28E-14 | 122 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-19 | 122 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-4 | 123 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLNKNAYSYY PAPNQEHTHP FSLDNNQAKD PGSIPSFGIE SFNTTSLAPN MSAHMPPMEG 60 PLPTKEPEAP EDMPARVATI KDEMDARNGV ELKCETVDAL PELKQGHESC ASKFNSGEYQ 120 VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPIT WKFKYSRFWP 180 NNKSRMYILD STSEFVKTHG LQAGDALIIY KNPVPGKYIV RGEKAIQQTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-31 | 112 | 219 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-31 | 112 | 219 | 2 | 108 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373902 | 0.0 | AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169706.1 | 1e-170 | B3 domain-containing protein IDEF1-like | ||||
Swissprot | Q6Z1Z3 | 1e-101 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | A0A453S423 | 1e-169 | A0A453S423_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453S579 | 1e-169 | A0A453S579_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7AL_C0DB55E98.2 | 1e-173 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 8e-34 | B3 family protein |