PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_B000BC0DD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 28566.4 Da PI: 9.4486 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8.1e-53 | 85 | 213 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wka Traes_7AL_B000BC0DD.2 85 VPPGFRFHPTEEELLNYYLRKKVASEEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKA 171 69****************************.9***************952444443456***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk++++ + +g++ktLvfykgrap+g+k+dW+mheyrl Traes_7AL_B000BC0DD.2 172 TGRDKAIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 213 *********.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 75 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.645 | 85 | 238 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-28 | 86 | 213 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
SLSTLQPLYK WPPFLPHRRI THSLLASSPP QLQALAPIYL PLSAHLSAFN TRTQSTGPWK 60 NHFTQAIVLS IDLTMSISVN GQSCVPPGFR FHPTEEELLN YYLRKKVASE EIDLDVIRDV 120 DLNKLEPWDI QEKCKIGSGP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKAIYN 180 AVKRIGMRKT LVFYKGRAPH GQKSDWIMHE YRLDDPSSTT DAAPTATMPL SLDAAVRHAQ 240 VVSAATSSDA GQEDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-46 | 82 | 217 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-46 | 82 | 217 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-46 | 82 | 217 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-46 | 82 | 217 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swm_B | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swm_C | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swm_D | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swp_A | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swp_B | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swp_C | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
3swp_D | 6e-46 | 82 | 217 | 17 | 149 | NAC domain-containing protein 19 |
4dul_A | 6e-46 | 82 | 217 | 14 | 146 | NAC domain-containing protein 19 |
4dul_B | 6e-46 | 82 | 217 | 14 | 146 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248449 | 0.0 | AK248449.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176e18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164672.1 | 1e-119 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 9e-93 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A453S1X7 | 1e-180 | A0A453S1X7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7AL_B000BC0DD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-82 | NAC family protein |