PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7AL_635989DBF.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 809aa MW: 92215.5 Da PI: 5.8372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7AL_635989DBF.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	57	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +fY +Y+ + GF ++++++++ +g +++tf Csk g+++ ++ ++ ++ t+tgCkak+ vk + +++wev+ leleHnH Traes_7AL_635989DBF.1 57 QFYVAYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKIIVKDAHfQNRWEVIVLELEHNH 140 6**************99988..9999**********99877..77788889***********9************* PP FAR1 88 ela 90 +l Traes_7AL_635989DBF.1 141 PLD 143 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-17	57	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.4E-20	263	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	541	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-8	541	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-5	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MEEEGYSTES SNEGDVQEDG DKEKSLAEGD VFKPVDMDPE WIPKVGMVFD SEEDAFQFYV 60 AYGCHSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV 120 KDAHFQNRWE VIVLELEHNH PLDPGSVKYK KHLENIPFSL NPPRLSEAPQ SSSVVGHSSS 180 FGDSGIPSSA QIEIKTKIDR NRKLKLAEGD LEALVSFFND MQDRNPCFFH SLDMNEQGQL 240 RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS 300 LGAYVWLFDT WLRCMNATSP PSIITNYCHD VAIAVKKVFP NSRHRFCLRH ILNELPEKLA 360 GMEKKDEVIS TFSTLAYDSV TTLDFDKEWQ EMTHQFQLEG NEWLSKLYEV RAQWAPAYVK 420 DFFWAGMSVT DRTDSATDYF DGWLTSDTSV KMFVEQYEAA VRTKLEKETY EDLHSSQMRP 480 QLMTGLPVEE QAAKMYTMEI FQTFLNELGR SFHCNYSILD RSDSVVTYIV SEHVNQTKVD 540 YKVAYDNAED DIWCFCRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS 600 MSRDVSLSSQ ELGGYDDLYK LGHQYFAEVV ELGSVNSESK DYALSVMREI RDKVISYEKS 660 LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD 720 TLKKKTKRAY NKRRNATANN LCTTVTATDS ITESANVQED QVNEGWPLTS SGAPDTFPYG 780 VETISFDLTQ YNNAPSFHWP ESSSRSQLQ

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MEEEGYSTES SNEGDVQEDG DKEKSLAEGD VFKPVDMDPE WIPKVGMVFD SEEDAFQFYV  60
AYGCHSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV  120
KDAHFQNRWE VIVLELEHNH PLDPGSVKYK KHLENIPFSL NPPRLSEAPQ SSSVVGHSSS  180
FGDSGIPSSA QIEIKTKIDR NRKLKLAEGD LEALVSFFND MQDRNPCFFH SLDMNEQGQL  240
RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS  300
LGAYVWLFDT WLRCMNATSP PSIITNYCHD VAIAVKKVFP NSRHRFCLRH ILNELPEKLA  360
GMEKKDEVIS TFSTLAYDSV TTLDFDKEWQ EMTHQFQLEG NEWLSKLYEV RAQWAPAYVK  420
DFFWAGMSVT DRTDSATDYF DGWLTSDTSV KMFVEQYEAA VRTKLEKETY EDLHSSQMRP  480
QLMTGLPVEE QAAKMYTMEI FQTFLNELGR SFHCNYSILD RSDSVVTYIV SEHVNQTKVD  540
YKVAYDNAED DIWCFCRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS  600
MSRDVSLSSQ ELGGYDDLYK LGHQYFAEVV ELGSVNSESK DYALSVMREI RDKVISYEKS  660
LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD  720
TLKKKTKRAY NKRRNATANN LCTTVTATDS ITESANVQED QVNEGWPLTS SGAPDTFPYG  780
VETISFDLTQ YNNAPSFHWP ESSSRSQLQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372473	0.0	AK372473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3002N21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171637.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_020201233.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_020201234.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	M8ASV4	0.0	M8ASV4_TRIUA; Protein FAR1-RELATED SEQUENCE 6
STRING	Traes_7AL_635989DBF.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-110	FAR1-related sequence 6

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]