PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_44206BE21.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 169aa    MW: 19430.6 Da    PI: 11.3492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_44206BE21.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1987142156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rrk+ ++tkeq   Le  F+ ++ +s+ +++eLA++l+L+ rqV vWFqNrRa+ k
  Traes_7AL_44206BE21.1  87 RRKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTK 142
                            79999*************************************************98 PP
2HD-ZIP_I/II1093.3e-3588168181
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                            +kk+rl+keq +lLE sF++++ L++ +K+elar+L+l+ rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en+rL+
  Traes_7AL_44206BE21.1  88 RKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTKLKQTEVDCEFLRRWCESLTHENQRLK 168
                            69*****************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2062145IPR009057Homeodomain-like
SuperFamilySSF466891.24E-2067145IPR009057Homeodomain-like
PROSITE profilePS5007117.83184144IPR001356Homeobox domain
SMARTSM003892.9E-1586148IPR001356Homeobox domain
PfamPF000467.5E-1787142IPR001356Homeobox domain
CDDcd000861.99E-1287145No hitNo description
PRINTSPR000317.4E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000317.4E-5124140IPR000047Helix-turn-helix motif
SMARTSM003400.0012144169IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-7144168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAWPSNRRRR RVAHPRRRAA XPNHPVRLDE LFPQHGKEER DQDEQKTGGK GARRKMKVAD  60
DEGRSSSSNG PCLSDGGGSD GGGGGGRRKK LRLTKEQCAL LEGSFRAHNI LSHVQKQELA  120
RQLNLSSRQV EVWFQNRRAR TKLKQTEVDC EFLRRWCESL THENQRLKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592GRRKKLRL
2136144RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180166.19e-78homeobox-leucine zipper protein HOX18-like
RefseqXP_020181275.19e-78homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F65e-41HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A3B6RP524e-90A0A3B6RP52_WHEAT; Uncharacterized protein
STRINGTraes_7AL_44206BE21.11e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-35HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]