PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_19F222799.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 746aa    MW: 81307.3 Da    PI: 6.8893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_19F222799.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-152468147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Traes_7AL_19F222799.2 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.7E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
PfamPF002491.5E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-82464IPR009057Homeodomain-like
CDDcd001671.09E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP  120
KSSVSLSNSN AEMASNGTLQ LTCIRKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS  180
SNHGVSGGIE PTKTENKDIA TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDGSHE  240
DCLDNSMKHM QLKPNTVETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDRVG  300
GANGSMDCIH PTLPVDPKIG SSSTAQSFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN  360
MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA ENAQGRHIGS PPSMASVVAA  420
TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTTDVQ RATENCPVDN APKECQVAQE  480
QGQPEAMIVV ASSGSDKSGK GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS  540
SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS  600
EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL  660
VGPRATFPIE LSHLNMKSRR TGFKPYKRCS VEAKENRVPA ADEVSGKHQM ETDEKLKHLY  720
STVNQQSILM DLASHPRPKH HMDQQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609660.0AK360966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K17.
GenBankJN6032420.0JN603242.1 Hordeum vulgare circadian clock associated 1 (CCA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195458.10.0protein LHY
RefseqXP_020195459.10.0protein LHY
RefseqXP_020195460.10.0protein LHY
RefseqXP_020195461.10.0protein LHY
TrEMBLA0A3B6RJX70.0A0A3B6RJX7_WHEAT; Uncharacterized protein
STRINGTraes_7AL_19F222799.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.19e-41circadian clock associated 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]