PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_04D939077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 32701.3 Da PI: 7.9765 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 4e-17 | 16 | 61 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl Traes_7AL_04D939077.1 16 LWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 6*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++ Traes_7AL_04D939077.1 67 RGRFSPEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.227 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.53E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 15 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.13E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.945 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGHHSCCNQQ KVKGGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF SPEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKAP 120 AAPNVTTTSS TTSTSPPNNG LAPCSGSTAT SDVHHRRLQH PTFSCAPAGD HLQLDAIIGH 180 HQSTSLALPV AAGAGQDSPP GMSHHCPLFM FDTGVVSTPF ASAAAQQHPF IASFTAAMAE 240 ADTPSCYHLP PLVDGMGAMG MCMEAMDDHX XXXXXXXXXX XXXXXXXXXX XXGGGGAARA 300 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-26 | 15 | 116 | 8 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111808 | 1e-153 | AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence. | |||
GenBank | AK112117 | 1e-153 | AK112117.1 Oryza sativa Japonica Group cDNA clone:002-129-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193359.1 | 0.0 | myb-related protein Hv1-like | ||||
TrEMBL | A0A3B6RJZ9 | 0.0 | A0A3B6RJZ9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_04D939077.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6032 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 3e-79 | myb domain protein 103 |
Publications ? help Back to Top | |||
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