PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_FECA3FE13.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 457aa    MW: 49239 Da    PI: 8.1118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_FECA3FE13.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19211261256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Traes_6DL_FECA3FE13.1 211 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 261
                            59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-31210270No hitNo description
PROSITE profilePS5103222.998211268IPR001471AP2/ERF domain
SMARTSM003805.9E-39211274IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23211269IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-32211269IPR001471AP2/ERF domain
PRINTSPR003678.2E-11212223IPR001471AP2/ERF domain
PfamPF008472.7E-12212261IPR001471AP2/ERF domain
PRINTSPR003678.2E-11234250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDAADSGGRR ERRWKGKAAS SAAEKQQQQL APVLEDAPAA ALLPPLKKMR SPDCRLRRSV  60
SSLSSAPASP DSSSVSNPLS PPATSLPLHA SSTRQIFPFA YDPSPAAAPR LLQLLRYSSS  120
LYQQPMLPQQ LQQQQHTPSQ HPQMISFGDA QQQQQQQFEA AAALIPPQYM APEALRYWSA  180
ALNLSPRGVL GGVVPPALYQ HLLRPPGPAK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT  240
FDTAEDAAMA YDREAFKLRG ENARLNFPDL FLGKGRSGGS GRTSASAAAS ASSSSTSAPP  300
TPDETHAQQA QLLLQREQQQ QHTDGQANTG PKPPLSAAEQ DGQPEPEQNP QLQNAEQHCS  360
DGSTAMMQQA PVTPGGVWGP ADDAWFSAWG PGSSVWDYDM DSAHGLLLQS RFAGEQAGMD  420
YVPSAPEAHV APAAGTGTAC GAPPSPLPPR PPFMWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20210268463ATERF1
3gcc_A8e-20210268463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674350.0AK367435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183709.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A453P5N30.0A0A453P5N3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_FECA3FE13.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-37ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]