PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_FDED400C4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 793aa MW: 89522.4 Da PI: 8.7188 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.6e-17 | 33 | 116 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C a+++vk++ d+ +v+ +l+HnH+ Traes_6DL_FDED400C4.1 33 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 114 5*****************9999.6677****************9988.....99*********************************9 PP FAR1 89 la 90 ++ Traes_6DL_FDED400C4.1 115 VS 116 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-15 | 33 | 117 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-28 | 237 | 330 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.31 | 523 | 559 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-5 | 527 | 555 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.7E-6 | 534 | 561 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MENIDPYLEE SDGQDIGIPE VGMVFNNHME VNRFYRRYAR RVGFGVSVRR SSFSQEGTCL 60 YLELMCCKGG RPRYEPKFRK RASSTTNCPA RIRVKLWGDK LLHVELANLD HNHPVSPAMA 120 RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLGA LEELLFGESK NHKFVERGRL 180 KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCVRNVF WADAWSRAMY EYYNDAITLD 240 TSYVVSKHDM PLVTFLGVNH HGQSVLLGCG LLSDETAETY TWLFKAWVAC MSGNLPKAII 300 TDQCRGIQSA VAEVVPGVRH RICLHQIMKK AADQLSGLSE YKAISKALQK AAYDSLTVDE 360 FEGEWSTLIT YNGLQGHDWL RSLYECRFSW VPIFLKDAFW AGMSATQRSE TITPFFEGYV 420 DLKTSLKQFL GKYVMILQSK YEKEAQADFE TFHKQRPPVS KFYMEEQLSN VYTHNMFKKF 480 QDEIEAIMYC HVSLMNGDGP ISTFNVKECI FLEDGKRTMS KIFAVTYNTE EKDITCICGG 540 FQFSGILCRH SLSVLKFQQV REVPSQYVLD RWKKDFRQLH VMGRLSSDVV PDNRVDRYDY 600 LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD TQPRIKSRIP KVKPNTVTGQ 660 NLVNVVTDNG NGGPKGPEAS ASAQASQIQK GVAEKAVVPA GYIGVPANVQ QFMGNQAAMR 720 PSIVYMVPSG VDPQAFGNGV LMPVMYQQMF QIPQQPNGAA QDTLANGKRK RPRAQKPTET 780 SHQSNGTSGP AAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375756 | 0.0 | AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189240.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
TrEMBL | A0A453P1Z0 | 0.0 | A0A453P1Z0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_FDED400C4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-133 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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