PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_ED5844DD2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 828aa MW: 94231.7 Da PI: 6.9094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.5 | 1.2e-19 | 216 | 300 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn+YA ++GF v++ +++k+ + ++ C+++ k + ++ +++r++++ ++t+C+ak+ vk+ +g+w+++ +++eHnH Traes_6DL_ED5844DD2.1 216 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNH 296 69*******************9......4677******9988755543799999******************.9************** PP FAR1 88 elap 91 +l+p Traes_6DL_ED5844DD2.1 297 PLSP 300 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-18 | 216 | 300 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-29 | 422 | 512 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.013 | 703 | 740 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 828 aa Download sequence Send to blast |
ASALPARAAG GHAQQVPAAA AAPPTSSRVV AKSNNSSAKT PGSSSNKRVI YIVAGDDGSH 60 VPILRKVQVY GEEGSKGYEK TPAPACNVVK QARLDAGKQP VRRPRIQLLS NNREERSAEL 120 MDDNAEAAIA LQVKLERSAS YVDRSLQLQT TEEHDVMEID DISSDDTGSE SDSDSSSGSE 180 SEKEEGRFFY PAPEALGTVK APQVGMKFPT LEDAHEYYNT YALQTGFVVV RGRNYKRQRF 240 QLDCNRNRKV KLVEDLNLKR KRKKNVIEKT NCQAKIIVKL IKGEWVIAAV QNEHNHPLSP 300 SRSFTRFLTS QKHMSPEERS FSRVLQQSRV PPGEILKILR RMSAFFRELP SKEKQALILQ 360 SAEQWRKANL DVEKTLNHFE ELQLQDPCFF YTVQKDEDSM LRSIFWTDAR SRMDYEIFGD 420 FVSFDTTFST NRHNMPFVPI TGMNNRGRTI VLGCALLQDR KAETYKWMLQ TFLQEMGGGQ 480 MPKSVITSQD EAMSKAIAEV MPQARHRFCR WNGKAQEKMA AFVAARGNMK AELDILVDNS 540 LTETEFEQGW SALIQRHDAS ENEYLQLLWE MRKTWAPVYF MQDFFPFVVS ARGSQGAFSL 600 FKENVLPKDK IENLIEKYEE MQDKIKKTDE EDALEAATEP SCFSLQPIER HASRVYTRQI 660 FLKVQKELLH STAFKVQEIE RGALYRLDKA SNYENPEYDR DSFEVSVESG VTDTYTCQCA 720 KFARDGILCC HVFRLFTQFG IDEIPEKYIV ARWTDGFREE QLERREEGRL VAAARREEDA 780 ARYAALMSKA AGIGREICGD GAKCDAFMLE LDRIREKMAT MVMANDHV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 264 | LKRKRKKN |
2 | 259 | 263 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146870.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A453Q388 | 0.0 | A0A453Q388_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_ED5844DD2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 3e-74 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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