PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_9FC9C02351.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 315aa    MW: 33214.2 Da    PI: 7.2487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_9FC9C02351.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05526223
                            EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                            +C+ C ++F ++  L  H+r+H
  Traes_6DL_9FC9C02351.1  5 TCKLCFRRFASPRALAGHMRSH 26
                            6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.049426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162431IPR007087Zinc finger, C2H2
PfamPF138944.1E-4526No hitNo description
SuperFamilySSF576675.53E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.53E-7167194No hitNo description
SMARTSM003550.28172194IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-9172194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078172194IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM003553.9239261IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-11239261IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746239261IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAKNTCKLCF RRFASPRALA GHMRSHSVRN LAAKQQISSA SSASTSFTAA ADDDVSFKKP  60
LPIYALRENP KRSLRVTDVA FSDRESEAES TPPHPKRAHA AAAGGETEPL SSVSDAATPE  120
EDVALSLMML SRDSWPSMGH GYGDGDYSDD GSDGGYTLPA PDPAPVEKRT RFQCGACKKV  180
FRSYQALGGH RASHVRGGRG GCCAPPVAPP PPPPPQPLAP VTLMEREGDE DMDGKGSPRE  240
CPYCYRVFAS GQALGGHKRS HVCSAAAAAA QAHAAAAPPD PIKAFGMIDL NIALPFEEVE  300
LSAVSDPRFS SNPGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186301.10.0zinc finger protein ZAT1-like
TrEMBLA0A3B6QJ020.0A0A3B6QJ02_WHEAT; Uncharacterized protein
TrEMBLA0A453P8F70.0A0A453P8F7_AEGTS; Uncharacterized protein
STRINGTraes_6DL_9FC9C02351.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-30C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]