PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_5D47DC487.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 634aa    MW: 68745.2 Da    PI: 5.9301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_5D47DC487.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-08539588147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r +++  E ellv+av++lG g+Wk + ++     + Rt  ++k++w ++
  Traes_6DL_5D47DC487.1 539 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFrdnEERTYVDLKDKWKNL 588
                            678999*************************99**99**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.27E-7364437IPR029071Ubiquitin-related domain
PROSITE profilePS500538.807369433IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.902.3E-4370437No hitNo description
CDDcd017690.00466373438No hitNo description
PROSITE profilePS5129416.171534593IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-10535590IPR009057Homeodomain-like
SuperFamilySSF466891.28E-12536591IPR009057Homeodomain-like
SMARTSM007171.0E-8538591IPR001005SANT/Myb domain
PfamPF002497.5E-6539588IPR001005SANT/Myb domain
CDDcd116601.85E-15540590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MYALDLLATV AESLSSDEDD YSTESDQDVA AASHNSDRAS VKAEQFDEAP QLNSTALEND  60
CCRGYTVGCD GICASLGQTS IRKTEDLSTQ NVADTVEGSL IERADADNLL TQNVADAAAE  120
PLIEKKPDVF AEGSLVSCTK PSLLDCGLGT IPEYGTIGVC HPCFPTSADV KQVHQATPAI  180
IRSLVDGNAA ALHGLVDTMD LDVKPSVLNS ESSSGVHFGG HDNGHRASPF YPVQVQHAAD  240
IDNDEKSTRC VLPSTSGSKD GYLPNKGDCR TRRLLSTRMR KAARNKMCGE LPNKGSKFGG  300
KKISATRRRA QMQRMLKTKK VVECYSAQPS DEGVLTETSG TSCSRGGQDP TCASESSQRK  360
PCASEGCNVK FIIKSFNIPE LSIEVPENAT VGSLKRIVMD AVTSKVEGSL SVSVLLQGKI  420
IQDDNKTLHQ AGICHGAKPD SIGFTLECEA KQDSRPSGIA PEEMDSAGPS VVNPLSKIKF  480
EQPFISCTLG DYPYEGAAQV RPEICQAIVP YGTSNPDALA IVPVVPRSRQ RDFGQRRKRR  540
PFSVAEVELL VEAVELLGFG RWKNVKNHAF RDNEERTYVD LKDKWKNLVH TASIPPQLRR  600
GRAIPPQDLL DRVLAAQAYW TVHHAKRDEE EGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A4e-425106223113Telomere binding protein-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733770.0AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194084.10.0telomere-binding protein 1-like
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A3B6QP460.0A0A3B6QP46_WHEAT; Uncharacterized protein
STRINGTraes_6DL_5D47DC487.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-53TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  6. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]