PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_30F715B53.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 390aa    MW: 42963.4 Da    PI: 10.7929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_30F715B53.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-13142186147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Traes_6DL_30F715B53.2 142 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 186
                            789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-16136192IPR009057Homeodomain-like
PROSITE profilePS5129415.408137191IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-6140192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-18140189IPR006447Myb domain, plants
SMARTSM007175.3E-11141189IPR001005SANT/Myb domain
PfamPF002493.5E-11142186IPR001005SANT/Myb domain
CDDcd001672.89E-8144187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
TSARAPWPTR RGPRTLSLPR NQNARPKPRT PPQRRHHPHT PTQPGPRRHT ATRRDAATTQ  60
ADAAELRTKA SLSIPRSSER ETATGTGTQR DLARRAPSGL RASPMVSTNP PPPPALSEAA  120
AAVSGDDASK KVRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR  180
SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKASKNE PGYALKTDPS AMLRNSGMNV  240
AVSPWTHNSI PPVVASSFMK EDLGAGSMGP NIFCSSSSEG PPRAWQSGET NDQINQVPSL  300
RIMPDFAQVY SFLGSVFDPS TKGHLQKLKE MNPIDVETAL LLMRNLSINL TSPDFEDQRK  360
LLSSYNSTSD GLELGSSRSS LLTDNALSLF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089540.0BT008954.1 Triticum aestivum clone wdk1c.pk011.f12:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182046.10.0protein REVEILLE 6-like isoform X3
SwissprotQ8H0W31e-101RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3B6QGA00.0A0A3B6QGA0_WHEAT; Uncharacterized protein
TrEMBLA0A453PA630.0A0A453PA63_AEGTS; Uncharacterized protein
STRINGTraes_6DL_30F715B53.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-89MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]