PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_29F162FB2.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 307aa MW: 33384.1 Da PI: 11.0323 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.4 | 1e-32 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF Traes_6DL_29F162FB2.2 150 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 206 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-37 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.727 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 151 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-22 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-22 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MDKRESPSGV TRSRRGVRGA DREGAQRDGG GKLASRGRTH RERAAGGRRR VGAMLLPSSS 60 SSSYDPKGDS FGKSVDDHMR STLTFGDKHS VFASQNTDYG HPMACISYPF NDSGSVWAAY 120 GSRAMFQPLM AEGGASATAR VPLPVELAAD EPIFVNPKQY NGILRRRQLR AKLEAQNKLT 180 KNRKPYLHES RHLHAMKRAR GSGGRFLNSK QLKQQQQQSG SACTKAIADG ANSLGSTHLR 240 LGSGAAGDRS NSASKAMSSQ ENSKRVAAPA PAFTMIQAAR KDDDFFHHHG HHLSFSDHFG 300 QSSDRYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-20 | 150 | 211 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT008936 | 0.0 | BT008936.1 Triticum aestivum clone wdi1c.pk002.b10:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156071.1 | 0.0 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
TrEMBL | A0A3B6QIS8 | 0.0 | A0A3B6QIS8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_29F162FB2.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 3e-36 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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