PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6DL_1571314A3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 41aa MW: 4839.73 Da PI: 10.0218 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2.1e-08 | 1 | 38 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ +L+el+P+ +K++ +++LekA Y+k Lq Traes_6DL_1571314A3.1 1 REKISERLRTLQELVPNG-----TKVDMVTMLEKAFSYVKFLQ 38 89**************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-11 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-7 | 1 | 41 | No hit | No description |
PROSITE profile | PS50888 | 12.779 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-6 | 1 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-10 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 41 aa Download sequence Send to blast |
REKISERLRT LQELVPNGTK VDMVTMLEKA FSYVKFLQLQ V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372884 | 1e-52 | AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147146.1 | 1e-20 | transcription factor SPATULA-like | ||||
Refseq | XP_020147154.1 | 9e-21 | transcription factor bHLH84-like | ||||
Refseq | XP_020147163.1 | 9e-21 | transcription factor bHLH84-like | ||||
Refseq | XP_020155972.1 | 1e-20 | putative transcription factor bHLH086 | ||||
Swissprot | Q9C707 | 7e-18 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A3B6PQV5 | 2e-19 | A0A3B6PQV5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6QH58 | 2e-19 | A0A3B6QH58_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6QJ79 | 2e-19 | A0A3B6QJ79_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WIL5 | 2e-19 | A0A446WIL5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453PDH6 | 2e-19 | A0A453PDH6_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PDQ3 | 2e-19 | A0A453PDQ3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PE06 | 1e-19 | A0A453PE06_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BPV5 | 2e-20 | M8BPV5_AEGTA; Uncharacterized protein | ||||
TrEMBL | M8C9V6 | 2e-20 | M8C9V6_AEGTA; Transcription factor bHLH83 | ||||
STRING | EMT23827 | 3e-21 | (Aegilops tauschii) | ||||
STRING | Traes_6BL_9B25E6A10.1 | 2e-21 | (Triticum aestivum) | ||||
STRING | Traes_6DL_1571314A3.1 | 2e-21 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-20 | ROOT HAIR DEFECTIVE6 |