PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_032299C05.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 383aa MW: 43514.6 Da PI: 7.6133 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 35 | 54 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ Traes_6DL_032299C05.2 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP | |||||||
2 | zf-CCCH | 23.7 | 8.1e-08 | 139 | 160 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg Traes_6DL_032299C05.2 139 PICS-FAAAGTCPYGKECPQMHG 160 5788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.901 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-5 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-5 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-5 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.136 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.017 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-5 | 140 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.86E-14 | 189 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.2E-11 | 197 | 263 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00305 | 203 | 264 | No hit | No description |
PROSITE profile | PS50089 | 12.371 | 204 | 262 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.1E-6 | 204 | 261 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.8E-7 | 204 | 261 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 228 | 237 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 8.606 | 291 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 15 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TPPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS 120 LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTSCGKQC LHPYRPSEGG 180 AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW 240 RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF 300 DFGRDTCPFG GRCFYKYCMF TSMPTPMGVW RSRQRWQCFI FMPTMVVWSM QEILDWRTCS 360 AGYICSIQKE AVEKRSTYLL REP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372037 | 0.0 | AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192972.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Refseq | XP_020192973.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Swissprot | Q5ZA07 | 1e-137 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A453PF59 | 0.0 | A0A453PF59_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_032299C05.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-107 | C3H family protein |
Publications ? help Back to Top | |||
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