PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6BS_9B9661BD3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 29288.1 Da PI: 6.5045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.5 | 1.2e-13 | 36 | 114 | 12 | 97 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k + +++p++ ++ ++ s t++l ++gr ++v + + g+ v+++GW Fv a++++e+D+++F ++g+s+f +++f Traes_6BS_9B9661BD3.1 36 K-NSIRIPRELSTHLR--SRISDTIKLSAPNGRAYDVVV--TWEFGELVIRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114 3.55999*99874444..45888****************..5556679***************************9999..66666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-18 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.758 | 24 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-17 | 27 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0027 | 27 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.77E-14 | 35 | 115 | No hit | No description |
Pfam | PF02362 | 1.3E-11 | 36 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-4 | 188 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MNEDCENCAF WRDHYYWDHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLS 60 APNGRAYDVV VTWEFGELVI RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE 120 KMASCFQSPS EIFGIFPPSE PCDHHVLNGQ AAPNPRHVQT QVEFDYTMST GCHLTKSQDE 180 KVVEIARKIR SEIPLYVAIM KKLNVNVKDC SINIPLRLVR HLKEEAGSAI IKLEAPDGNI 240 YNVRASKHSE DQVVLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3B6IMB6 | 0.0 | A0A3B6IMB6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RU74 | 0.0 | A0A446RU74_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_9E4FBF387.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_6BS_9B9661BD3.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16363 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-24 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|