PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_CC009B78A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 398aa    MW: 44050.5 Da    PI: 8.3039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_CC009B78A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023118140323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   Cgk+F +   L++H  +H
  Traes_6BL_CC009B78A.2 118 CSydGCGKTFVDAGALRKHAHVH 140
                            78889**************9887 PP
2zf-C2H216.42.6e-05145169123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            y+C+   Cgk F ++s LkrH   H
  Traes_6BL_CC009B78A.2 145 YVCHyeGCGKKFLDSSKLKRHFLIH 169
                            9********************8877 PP
3zf-C2H221.65.7e-07175199123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++Cp   Cgk Fs   nLk H++tH
  Traes_6BL_CC009B78A.2 175 FVCPheGCGKAFSLDFNLKAHMKTH 199
                            89**********************9 PP
4zf-C2H215.64.5e-05205230123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + Cp   Cg++F++ s L+ H r  H
  Traes_6BL_CC009B78A.2 205 HMCPypECGRRFTQESKLRAHFRAqH 230
                            689999***************99877 PP
5zf-C2H211.80.00073271296123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            y+Cp   C k + + + L+ H+++ H
  Traes_6BL_CC009B78A.2 271 YVCPydGCAKAYIHEYKLNLHLKKeH 296
                            99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-13112142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.928116145IPR007087Zinc finger, C2H2
SMARTSM003550.0018116140IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.76E-6117141No hitNo description
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-14143165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921145174IPR007087Zinc finger, C2H2
SMARTSM003550.0024145169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147169IPR007087Zinc finger, C2H2
SuperFamilySSF576673.93E-14156209No hitNo description
Gene3DG3DSA:3.30.160.609.3E-20166200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739175204IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4175199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.219205235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-8205227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0077205230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-5207230No hitNo description
Gene3DG3DSA:3.30.160.605.9E-8263293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-5266293No hitNo description
PROSITE profilePS501578.517271301IPR007087Zinc finger, C2H2
SMARTSM003550.012271296IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MPSDSEPPSL SVPTRSPVNI SRRQPQPQPQ DQIRIFPCNN HPYAVIAFRP AAAGRRDAGT  60
PPPLPMDQGV GSAGPRHRRR PVRALQVGAR LAALKSKDKK EGACTAKPDP ATEVLFLCSY  120
DGCGKTFVDA GALRKHAHVH GERQYVCHYE GCGKKFLDSS KLKRHFLIHT GEKNFVCPHE  180
GCGKAFSLDF NLKAHMKTHF ADNYHMCPYP ECGRRFTQES KLRAHFRAQH EKSGAQNPGG  240
PVMNRNALGD HPHNTAKSPV TPPVPSADRP YVCPYDGCAK AYIHEYKLNL HLKKEHPNHY  300
LDAGAQAGPS RGTVSKNSRR SKPNLTTSMP LAKIPKRSGY TVPSPVVSIP EELQLPMKVL  360
YEDDSEETEE EGDNLEEGGL RYRAASGDDD DEETEEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-321182268117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569600.0AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.10.0uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-87YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A3B6PN740.0A0A3B6PN74_WHEAT; Uncharacterized protein
TrEMBLA0A446WCH40.0A0A446WCH4_TRITD; Uncharacterized protein
STRINGTraes_6BL_CC009B78A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-89C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]