PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_82D755454.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 482aa    MW: 52337.6 Da    PI: 5.6135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_82D755454.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.2e-183854761499
                            T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEE CS
                     B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvk 95 
                            + lv+ k+fa+++   + k++++ l+led++   W vkli  + +s++ +lt+GW++Fv +ngLk gD ++F+ d  ++ ++ +++v 
  Traes_6BL_82D755454.1 385 CALVFCKEFASACglPHAKKTTIHLQLEDKTTVPWPVKLICsEHNSNQRWLTTGWNKFVTDNGLKKGDACLFQPDksSNtEGLTMTVY 472
                            889**********5533334566788999999*******87788888899***********************663244566677777 PP

                            EE-S CS
                     B3  96 vfrk 99 
                            ++rk
  Traes_6BL_82D755454.1 473 LIRK 476
                            7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-18357477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-17362473IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-17366475No hitNo description
SMARTSM010196.4E-7368477IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476372477IPR003340B3 DNA binding domain
PfamPF023621.5E-16385476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MPGEFGNHLT NITPESDLVK LVAHDEPISD SNRCEANGGS ASDTDMQLEV TLSTLAIQFF  60
CRFYENVHMR GLTWQDDEYM QWVSGYHHIE RTNGLSARFM NELIGVGCYS YFPFGPFGPG  120
STVITIPESA WAEISVGLQS MLITRLDSFL QPKHSNAMGL NNSACTLPPE SVCVLADAAV  180
SSSVLADVAV SDTSMFEAAV PEFATVSEGV LAAAVVSDGI MVTAAVSDTA VSACALNSTA  240
VPDVMTDIHE AAGANTVKKR SRSEVVVVTE HGRGPHSDKE RCVPMELPSE NPKRKKSSVV  300
MTTGQQCLQI SAVQQMGVEQ CGIEVCSNNL MGPSQRPYIL PKKTTLPSEL EKKVKEKVKT  360
IQSELPIFVR ELKTYSVVGT GQGGCALVFC KEFASACGLP HAKKTTIHLQ LEDKTTVPWP  420
VKLICSEHNS NQRWLTTGWN KFVTDNGLKK GDACLFQPDK SSNTEGLTMT VYLIRKSSEK  480
EL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176311.10.0uncharacterized protein LOC109761911
TrEMBLA0A3B6PV770.0A0A3B6PV77_WHEAT; Uncharacterized protein
TrEMBLA0A446WT210.0A0A446WT21_TRITD; Uncharacterized protein
STRINGTraes_6BL_82D755454.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4962922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]