PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_3F20B009E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 166aa MW: 18944.5 Da PI: 9.086 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40 | 1.3e-12 | 63 | 143 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e GF +r ks+ + + + +++ vC ++gk+ e+++ + +++C a +++ + +d+ w+++k + HnH+ Traes_6BL_3F20B009E.1 63 DFYNLYSWEKGFGIRYGKSRLNVERT-KCMQEIVCGCSGKAGVENTR---------SCHCECPALIRLLRAEDNGWYIAKHRDTHNHS 140 6*****************99995544.67889*******99887555.........999***************************** PP FAR1 89 lap 91 l+p Traes_6BL_3F20B009E.1 141 LSP 143 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-9 | 63 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MNPRAPGWNK RLRIGAAAPS RPPCPNRISA FEKAVRRFAE NPTENVITPV IGTTFDSVDQ 60 AYDFYNLYSW EKGFGIRYGK SRLNVERTKC MQEIVCGCSG KAGVENTRSC HCECPALIRL 120 LRAEDNGWYI AKHRDTHNHS LSPNFGETIH WPSHKHIDVY IRDLVK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169825.1 | 1e-105 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446WSB0 | 1e-120 | A0A446WSB0_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_3F20B009E.1 | 1e-123 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 3e-12 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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