PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_3A98C155D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 812aa MW: 91625.8 Da PI: 8.9454 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.7e-17 | 53 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C a+++vk++ d+ +v+ +l+HnH+ Traes_6BL_3A98C155D.1 53 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 134 5*****************9999.6677****************9988.....99*********************************9 PP FAR1 89 la 90 ++ Traes_6BL_3A98C155D.1 135 VS 136 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-15 | 53 | 137 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.7E-27 | 257 | 350 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.31 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-5 | 547 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.7E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
METEGAAHPP KNPRRPRRRD LNALDPYLEE SDGQDIGIPE VGMVFNNHME VNRFYRRYAR 60 RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA RIRVKLWGDK 120 LLHVELANLD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLGA 180 LEELLFGESK NHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCVRNVF 240 WADAWSRAMY EYYNDTITLD TSYVVSKHDM PLVTFLGVNH HGQSVLLGCG LLSDETAETY 300 TLLFKAWVAC MSGNLPKAII TDQCRGIQSA VAEVVPGVRH RICLHQIMKK AADQLSGLSE 360 YKAISKALQK AAYDSLTVDE FEGEWSTLIT YNGLQGHDWL RSLYECRFSW VPIFLKDAFW 420 AGMSATQRSE TITPFFEGYV DLKTSLKQFL GKYEMILQSK YEKEAQADFE TFHKQRPPVS 480 KFYMEEQLSK VYTHNIFKKF QDEIEAIMYC HVSLMNGDGP ISTFNVKECI FLEDGKRTMS 540 KIFAVTYNTE EKDITCICGG FQFSGILCRH SLSVLKFQQV REVPSQYVLD RWKKDFRQLH 600 VMGRLPSDVV PDNRVDRYDY LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD 660 TQPRIKSRIP KVKPNTVTGQ NLVNVVTDNG SGPKGPEASA SAQASQIQKG AAEKAVVPAG 720 YIGVPANVQQ FMGNQAAMRP SIVYMVPSGV DPQAFGNGVL MPVMYQQMFQ IPQQPNGAAQ 780 DTLANGKRKR PRGQKPTETS HQSNGTSGPA AG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 18 | RRPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375756 | 0.0 | AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189240.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
TrEMBL | A0A453P212 | 0.0 | A0A453P212_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6BL_3A98C155D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-132 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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