PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_340C2A897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 375aa MW: 40946.4 Da PI: 5.8599 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.5e-15 | 189 | 248 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++g+++A+++d + g ++ k+++lg+++t+++Aa+a++ a++k++g Traes_6BL_340C2A897.1 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrrRKgKQVYLGSYDTEQKAARAYDVAALKFFG 248 789******************777786666336**********99***********9986 PP | |||||||
2 | AP2 | 48.7 | 1.8e-15 | 291 | 342 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I g ++ ++lg+f t+eeAa+a++ a+ +++g Traes_6BL_340C2A897.1 291 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 342 57****************88832...2.5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-12 | 189 | 246 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-16 | 189 | 258 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-25 | 190 | 262 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.228 | 190 | 256 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-18 | 191 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 191 | 256 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 191 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-22 | 291 | 350 | No hit | No description |
Pfam | PF00847 | 1.5E-9 | 291 | 342 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-17 | 291 | 352 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-27 | 292 | 356 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.624 | 292 | 350 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-19 | 292 | 351 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 332 | 352 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MMKSGEEVSQ GQQMNGFVEE KAAGESGYGR KIERSPSINL NSLPAIAPAT AEIGVLHGAV 60 ESEANDASTH KGDESSGTDQ KKVPKNEEVD EAEVQACADV KSHSVDPLNS ENHAGEKDAL 120 VTVPENEGCA DGGDNHKGVH VLSIVKKDES EEIVDSINPV TVAGYREEKG TAGSTSAITA 180 VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQVYLGSYD TEQKAARAYD 240 VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ 300 KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH 360 CIEGAGLKLL ATKPE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 222 | GRRRKGKQ |
2 | 279 | 300 | RRRSSCFSRGASIYRGVTRRQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252982 | 0.0 | AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153211.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Refseq | XP_020174447.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
TrEMBL | A0A3B6PQE0 | 0.0 | A0A3B6PQE0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WKX7 | 0.0 | A0A446WKX7_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_340C2A897.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-68 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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