PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_322DA92B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 172aa    MW: 19465.4 Da    PI: 9.194
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_322DA92B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.66.9e-1176118345
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 
                            k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV 
  Traes_6BL_322DA92B5.1  76 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVA 118
                            5678*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-962118IPR009057Homeodomain-like
PROSITE profilePS5007110.31771131IPR001356Homeobox domain
SMARTSM003890.00274127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-1175118IPR009057Homeodomain-like
CDDcd000864.72E-976117No hitNo description
PfamPF000463.0E-876118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEPGRLIFNT SGSGNGQMLF MDCGAGGIAG AAGMFHRGVR PVLGGMEEGR GVKRPFFTSP  60
DDMLEEEYYD EQLPEKKRRL TPEQVHLLER SFEEENKLEP ERKTELARKL GLQPRQVAXX  120
XXXXXXXXXX XXXXXXXXXX XLRRPPRRPR RPPPGQPPAP VTGGNVDRED AR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640061e-145AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04.
GenBankAK3642581e-145AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155642.13e-79homeobox-leucine zipper protein HOX16-like
SwissprotQ6YWR41e-49HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A3B6PP873e-78A0A3B6PP87_WHEAT; Uncharacterized protein
TrEMBLA0A446WJZ63e-79A0A446WJZ6_TRITD; Uncharacterized protein
STRINGTraes_6BL_322DA92B5.11e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-28homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]