PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_FDF16F4EA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 174aa MW: 18258.6 Da PI: 8.5465 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34 | 6.5e-11 | 37 | 79 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r++r+ +NRe+ArrsR RK+ ++ L+ ++ L eN + Traes_6AS_FDF16F4EA.1 37 QRRAKRMLSNRESARRSRMRKQRHLDDLAAQAAHLRRENAHVA 79 689************************************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-14 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.645 | 36 | 99 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-8 | 37 | 78 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.4E-9 | 38 | 110 | No hit | No description |
SuperFamily | SSF57959 | 5.63E-10 | 38 | 83 | No hit | No description |
CDD | cd14702 | 5.57E-15 | 39 | 87 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASSSGSGST GSLSTAAAMA MAAASGTEEE MRALMEQRRA KRMLSNRESA RRSRMRKQRH 60 LDDLAAQAAH LRRENAHVAA ALGLTARGLQ AVDAENAVLR TQAAELAARL HSLNDIIACM 120 SASNNTAAAV ALTVAAAATA TTTDPFLGGF DGASLDDYLF RSSPEMFMFP ALQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 57 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067356 | 1e-114 | BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds. | |||
GenBank | BT085301 | 1e-114 | BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds. | |||
GenBank | BT085353 | 1e-114 | BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds. | |||
GenBank | HQ858796 | 1e-114 | HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174961.1 | 3e-83 | bZIP transcription factor 11-like | ||||
TrEMBL | A0A3B6NJS7 | 1e-118 | A0A3B6NJS7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_FDF16F4EA.1 | 1e-118 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 2e-21 | G-box binding factor 6 |
Publications ? help Back to Top | |||
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