PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_CE4E76E1A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 372aa    MW: 40555.8 Da    PI: 5.068
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_CE4E76E1A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-11189245155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+++GV++++++g+++A+++d  +   g +rk  + g+++t+++Aa+a++ a++k++g
  Traes_6AL_CE4E76E1A.1 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrRRKGKQ-GSYDTEQKAARAYDVAALKFFG 245
                            789******************77668776667777.*****99***********9986 PP
2AP248.81.8e-15288339155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++ k+grW A+I       g ++ ++lg+f t+eeAa+a++ a+ +++g
  Traes_6AL_CE4E76E1A.1 288 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 339
                            57****************88832...2.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-13189255IPR016177DNA-binding domain
PfamPF008477.1E-8189243IPR001471AP2/ERF domain
SMARTSM003807.8E-19190259IPR001471AP2/ERF domain
PROSITE profilePS5103216.621190253IPR001471AP2/ERF domain
CDDcd000182.66E-15191255No hitNo description
PRINTSPR003671.4E-5191202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12191253IPR001471AP2/ERF domain
CDDcd000181.33E-22288347No hitNo description
PfamPF008471.5E-9288339IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17288349IPR016177DNA-binding domain
SMARTSM003802.7E-27289353IPR001471AP2/ERF domain
PROSITE profilePS5103218.624289347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-19289348IPR001471AP2/ERF domain
PRINTSPR003671.4E-5329349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMKSGEEVSQ GQQMNDFSEE KAAGESGDGR KIERSPSINL NSLPAIAPAT TEIGVLHGAV  60
ESEANDASTH KGDESSGTDQ KKVLKNEEVD EAEVQACADV KSDSVDPLNS ENHAGEKDAL  120
VTVAENEGCA DGGDNYKGVQ VLSIVKKDES EEIVDSINPV TVAGYREEKG ASGSTSAVTA  180
VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQGSYDTEQ KAARAYDVAA  240
LKFFGLNTKL NFSISEYEKE LADIQDMSPE ECVTYLRRRS SCFSRGASIY RGVTRRQKDG  300
RWQARIGLIA GTRDIYLGTF KTEEEAAEAY DIAAIEIRGK NAVTNFDRSN YMDRGMHCIE  360
GAGLKLLATK PE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222GRRRKGKQ
2276297RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529820.0AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153211.10.0AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_020174447.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A3B6NU080.0A0A3B6NU08_WHEAT; Uncharacterized protein
TrEMBLA0A446VNF10.0A0A446VNF1_TRITD; Uncharacterized protein
STRINGTraes_6AL_CE4E76E1A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-64AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]