PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_8BA1FF8B2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 644aa    MW: 70669.9 Da    PI: 4.2677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_8BA1FF8B2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.3e-49151511128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknra 77 
                            ++pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nra
  Traes_6AL_8BA1FF8B2.1  15 MAPGFRFHPTDEELVSYYLRRRVLGRRLRI-DAIAEVDLYRLEPWDLPplSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRA 101
                            579***************************.99**************96669999999***********99877777665577***** PP

                    NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            t +gyWk+tgkd+ev++ +g++vg+kktLvf+ grapkg +t+Wvmheyrl
  Traes_6AL_8BA1FF8B2.1 102 TPRGYWKTTGKDREVFH-RGRAVGMKKTLVFHAGRAPKGDRTNWVMHEYRL 151
                            *****************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-569169IPR003441NAC domain
PROSITE profilePS5100555.24615169IPR003441NAC domain
PfamPF023655.6E-2717151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MSSSSPPAAA EEVPMAPGFR FHPTDEELVS YYLRRRVLGR RLRIDAIAEV DLYRLEPWDL  60
PPLSRIRSRD AQWYFFARLD RKVAGAGAGG RGGPGNRTNR ATPRGYWKTT GKDREVFHRG  120
RAVGMKKTLV FHAGRAPKGD RTNWVMHEYR LLDNDGPQDM HVVCRIFQKV GSGPQNGAQY  180
GAPYMEEEWE NEDDAIENTP TSGTSTEMLA ITDTASAESN VEDEHIFSGI NERVQTPEVL  240
IPQEIAPLQA IAPPQAQDFN GTGMVSYADG DVPLDEILQE PVSDVSADNT GEPEEQSPLD  300
DHFSLADLSG CPNQDDGYVC QAGPIMFSDP SNGDQAYYPM RTYGNRNHAY RALSAEEFSD  360
TGNGTNAYSG QQQACPSDDQ NLYSGLQQAC PSDEQNLYLP TNGLPFPQQM DDNAPFYEAS  420
SDHKWENGKD DYVNVDDISL FEDDDIMALL NASDNDFSLD LLGPVDGSNS QLPAASNFDQ  480
KDEAKAQYGA SSSGSRENLY PDTMVPDVPM DDNAGKRYFT NMLGSYPAPP AMASEFPPTT  540
GKSIAALSRP SQIRVTAGIV QLGDHSFTGN EGSWPLQKNG VFNLLLSFTV ESNVSTKSIT  600
FDDEPAATRV STVPTVLRGG LYLFFVSAMI LMLSFKVGSC IYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4391519140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3664700.0AK366470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195893.10.0NAC domain-containing protein 78-like
TrEMBLA0A3B6NX490.0A0A3B6NX49_WHEAT; Uncharacterized protein
STRINGTraes_6AL_8BA1FF8B2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-59NAC domain containing protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]