PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_78DDE990E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 393aa    MW: 44993.6 Da    PI: 9.6964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_78DDE990E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-103003791498
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              l +p k a + +++  +++ + led++g+s  v+l  +  +g+  + +GW++Fv+++ +k  ++++F+++g s+f   v+vf 
  Traes_6AL_78DDE990E.2 300 F-LLIPPKPAGASKMVGLTNQLVCLEDSEGKSSMVRL--SVVDGSLAFYQGWSNFVSDHSIKWAEIILFEYTGCSKF--SVRVFG 379
                            3.56666666555444455678***************..8888999999**********************986777..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.841286381IPR003340B3 DNA binding domain
SMARTSM010190.0096289381IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-14289381IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-13291381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-7297378No hitNo description
PfamPF023629.8E-9300378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSGELAHQN RPRSRDTEME CEEEDETCKM LSEEEEEEVE MWDKKVQNRK AFTGSLEKGR  60
RMEEPIELSD DADDNETIME MSKKAGKHKE KRRRHNDDGD HKKKKKSVSS HGGDKNTHSA  120
DRDKDKRRDM LLSPNKNKDP FHSKEKSRTM PSSHGGDGKM HPGDHHNDNK SSTMWRSEYD  180
KYKGIPKKEM KKDKKPWPVH NGGSREEEKK KTVLVLSKEG KMPVLDNSSN KGNKWKKTPM  240
LYDKVKKPRT SDKDDKAGSY DRKKTTPGYN AGHKVQSGHG EKKKVKFAFF KVAGEHFEEF  300
LLIPPKPAGA SKMVGLTNQL VCLEDSEGKS SMVRLSVVDG SLAFYQGWSN FVSDHSIKWA  360
EIILFEYTGC SKFSVRVFGA DSWERVSFTV ETR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191105RRRHNDDGDHKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196102.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_020196103.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLA0A446VFI30.0A0A446VFI3_TRITD; Uncharacterized protein
STRINGTraes_6AL_78DDE990E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]