PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_779D5240A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 311aa    MW: 32991.1 Da    PI: 7.9532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_779D5240A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05526223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           +C+ C ++F ++  L  H+r+H
  Traes_6AL_779D5240A.2  5 TCKLCFRRFASPRALAGHMRSH 26
                           6********************9 PP
2zf-C2H210.60.0018236257223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            +Cp+C ++F +   L  H r+H
  Traes_6AL_779D5240A.2 236 ECPYCYRVFASGQALGGHKRSH 257
                            5*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.699431IPR007087Zinc finger, C2H2
SMARTSM003550.049426IPR015880Zinc finger, C2H2-like
PfamPF138944.0E-4526No hitNo description
SuperFamilySSF576675.26E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-7164191No hitNo description
PROSITE profilePS501579.078169191IPR007087Zinc finger, C2H2
SMARTSM003550.28169191IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-9169191IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746235257IPR007087Zinc finger, C2H2
SMARTSM003553.9235257IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-11235257IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAKNTCKLCF RRFASPRALA GHMRSHSVRN PAAKQQISSA SSASTSFTAA ADGDVSFKKP  60
LPIYALRENP KRSLRVTDVA FSDRESEAXX XXXXXXXXXX XXXXEPLSSV SDAATPEEDV  120
ALSLMMLSRD SWPSTGRGYG DGDYSDDGSD GGYTLPAPDP APVEKRTRFQ CGACKKVFRS  180
YQALGGHRAS HVRGGRGGCC APPIAPPPPP PQPLAPAPLM EREGDEDMDG KGSPRECPYC  240
YRVFASGQAL GGHKRSHVCS AAAAAAQAHA AAAPPAPIKA FGMIDLNIAL PFEDVELSAV  300
SDPRFSSNPG S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186301.11e-152zinc finger protein ZAT1-like
TrEMBLA0A3B6NSI71e-154A0A3B6NSI7_WHEAT; Uncharacterized protein
TrEMBLA0A446VIS41e-154A0A446VIS4_TRITD; Uncharacterized protein
STRINGTraes_6AL_779D5240A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]