PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_36AB0312C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37072.7 Da    PI: 4.3556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_36AB0312C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2076129356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Traes_6AL_36AB0312C.1  76 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 129
                            5678*************************************************9 PP
2HD-ZIP_I/II130.66.2e-4275166192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktk lE+d+++Lk+++dal++++++L +++++Lr
  Traes_6AL_36AB0312C.1  75 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKTLERDFDRLKASFDALRADHDALLQDNHRLR 162
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +++ 
  Traes_6AL_36AB0312C.1 163 SQVV 166
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-2064131IPR009057Homeodomain-like
PROSITE profilePS5007118.2271131IPR001356Homeobox domain
SMARTSM003893.4E-2074135IPR001356Homeobox domain
PfamPF000468.3E-1876129IPR001356Homeobox domain
CDDcd000865.05E-2076131No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2177137IPR009057Homeodomain-like
PRINTSPR000312.2E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6111127IPR000047Helix-turn-helix motif
PfamPF021832.3E-16131173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEPGRLIFNT SGSGNGQMLF MDCGAGGIAG AAGMFHRGVR PVLGGMEEGR GVKRPFFTSP  60
DDMLEEEYYD EQLPEKKRRL TPEQVHLLER SFEEENKLEP ERKTELARKL GLQPRQVAVW  120
FQNRRARWKT KTLERDFDRL KASFDALRAD HDALLQDNHR LRSQVVTLTE KMQDKEAPEG  180
SFGAAADASE PEQAAAEAKA SLADAEEQAA AAEAFEVVQQ QLHVKDEERL SPGSGGSAVL  240
DARDALLGSG CGLAGVVDSS VDSYCFPGGA GGDEYHECVV GPVAGGIQSE EDDGAGSDEG  300
CSYYPDDAAV FFAAAQGHGH HRTDDDDQQD DGQISYWMWN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640060.0AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04.
GenBankAK3642580.0AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155642.10.0homeobox-leucine zipper protein HOX16-like
SwissprotQ6YWR41e-135HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A3B6NTH60.0A0A3B6NTH6_WHEAT; Uncharacterized protein
TrEMBLA0A446VM890.0A0A446VM89_TRITD; Uncharacterized protein
STRINGTraes_6AL_36AB0312C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-58homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]