PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_1DC1EF368.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 794aa MW: 89606.6 Da PI: 8.7188 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.6e-17 | 34 | 117 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C a+++vk++ d+ +v+ +l+HnH+ Traes_6AL_1DC1EF368.2 34 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 115 5*****************9999.6677****************9988.....99*********************************9 PP FAR1 89 la 90 ++ Traes_6AL_1DC1EF368.2 116 VS 117 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-15 | 34 | 118 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-28 | 238 | 331 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.31 | 524 | 560 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-5 | 528 | 556 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.7E-6 | 535 | 562 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MMVNPDPYLE ESDGQDIGIP EVGMVFNNHM EVNRFYRRYA RRVGFGVSVR RSSFSQEGTC 60 LYLELMCCKG GRPRYEPKFR KRASSTTNCP ARIRVKLWGD KLLHVELANL DHNHPVSPAM 120 ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG ALEELLFGES KNHSFVERGR 180 LKLQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGCVRNV FWADAWSRAM YEYYNDAITL 240 DTSYVVSKHD MPLVTFLGVN HHGQSVLLGC GLLSDETAET YTWLFKAWVA CMSGNLPKAI 300 ITDQCRGIQS AVAEVVPGVR HRICLHQIMK KAAEQLSGLS EYKAISKALQ KASYDSLTVD 360 EFEGEWSTLI TYNGLQGHDW LRSLYECRFS WVPIFLKDAF WAGMSATQRS ETITPFFEGY 420 VDLKTSLKQF LGKYEMILQS KYEKEAQADF ETFHKQRPPV SKFYMEEQLS KVYTHNMFKK 480 LQDEIEAIMY CHVSLMNGDG PISTFNVKEC IFLEDGKRTM SKIFAVTYNT EEKDITCICG 540 GFQFSGILCR HSLSVLKFQQ VREVPSQYVL DRWKKDFRQL HVMGRLSSDV VPDNRVDRYD 600 YLSMRCLQLV DSAVLSDKYR LALRLVREVE KFLLNSNTHD DTQPRIKSRI PKVKPNTVTG 660 QNLVNVVTDN GNGGPKGPEA SASAQASQIQ KGVAEKAVVP AGYIGVPANV QQFMGNQAAM 720 RPSIVYMVPS GVDPQAFGNG VLMPVMYQQM FQIPQQPNGA AQDTLANGKR KRPRAQKPTE 780 TSHQSNGTSG PAAG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375756 | 0.0 | AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189240.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
TrEMBL | A0A453P219 | 0.0 | A0A453P219_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6AL_1DC1EF368.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-134 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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