PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_F59D340A9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 377aa MW: 43453.6 Da PI: 7.7674 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.6 | 1.1e-13 | 32 | 109 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +p kf+++++g s ++le ++g+ ++++ + +++vl++GW Fv+ +Lk+g f+vF+++++s f +v +f+ Traes_5DS_F59D340A9.2 32 KMAIPQKFVDNFNGH--ISEVIKLEAPDGNIYNIQA--IRDLNKIVLGSGWGVFVSFYKLKAGYFLVFRYIRDSHF--KVLIFD 109 489******888666..6779***************..999999****************************9999..887775 PP | |||||||
2 | B3 | 53.5 | 4.5e-17 | 170 | 250 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +++p kf++++ g s ++le ++g+ +++k+ +k +++vl+ GW F+++ +Lke D +vF+++g+s f +v +f+ Traes_5DS_F59D340A9.2 170 RQEMSIPQKFVNNFRGR--ISEVMKLEAPDGNIYNFKV--TKDLNKIVLRYGWAAFASDYQLKEHDLLVFRYIGDSHF--KVLIFDP 250 4569*******888766..6779***************..**********************************9999..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-19 | 14 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.137 | 18 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.32E-17 | 19 | 109 | No hit | No description |
SMART | SM01019 | 3.3E-7 | 21 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-11 | 32 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-22 | 154 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-22 | 155 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.589 | 158 | 251 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.40E-17 | 159 | 249 | No hit | No description |
SMART | SM01019 | 9.9E-8 | 161 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 171 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAPDQDYDQD NSHVDDTQKY FFKCMVGDFP EKMAIPQKFV DNFNGHISEV IKLEAPDGNI 60 YNIQAIRDLN KIVLGSGWGV FVSFYKLKAG YFLVFRYIRD SHFKVLIFDF GTCCEKEVFH 120 VLMNCGPDSQ EKESNSESHR RCELCDVHFY WHHLDDRQKH FLRLMVGDFR QEMSIPQKFV 180 NNFRGRISEV MKLEAPDGNI YNFKVTKDLN KIVLRYGWAA FASDYQLKEH DLLVFRYIGD 240 SHFKVLIFDP SGCEKQLFNI VLNHAPNVPK TCISHDRSFL RETRRRDCGS HDNNSRKTKK 300 MTPVDSPSPR SEGVTSPEVT MNSAGLREIT EPHYVLATGC NLTTAQKAEV DALVKKVRPV 360 IPFYITAMNK TSMSGSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357106 | 0.0 | AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176100.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176101.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176102.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176103.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176104.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
TrEMBL | A0A453JTT2 | 0.0 | A0A453JTT2_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453JTT7 | 0.0 | A0A453JTT7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_F59D340A9.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-19 | B3 family protein |
Publications ? help Back to Top | |||
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