PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_7E44031E8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 757aa    MW: 86233.4 Da    PI: 8.0844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_7E44031E8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.2e-11461112798
                            ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             g+   + +++le ++g++++v++  +k  ++ v+++GW eF++  +L +g +++F+ +g+s+f   v++f+
  Traes_5DS_7E44031E8.1  46 RGQ--IPDKVKLEVPDGKTYNVQV--SKEENGLVFQSGWAEFARTYELVQGTILLFESSGSSCF--EVRMFN 111
                            444..4568***************..*******************************8888999..777665 PP
2B358.41.3e-181442251098
                            HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                            + +++ l++p kfa ++  g    s +++le ++g++++v++  ++ +++ vl +GW  Fv+a +LkegD+++F ++g+s+f  +v++
  Traes_5DS_7E44031E8.1 144 A-SNNGLTIPEKFA-NYvRGH--ISEEIKLEVPDGQTYSVQV--DNEQNELVLLSGWDTFVSAYELKEGDTLLFGYNGNSQF--KVRI 223
                            4.4566********.554444..5679***************..**********************************9999..9998 PP

                            E- CS
                     B3  97 fr 98 
                            f+
  Traes_5DS_7E44031E8.1 224 FN 225
                            86 PP
3B356.93.8e-18294383299
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            fkv    +++k   +++p kfa+++ g    s +++le ++g+ ++v++     + + vl++GW +F+ a +LkegD +vF+++g+s 
  Traes_5DS_7E44031E8.1 294 FKVV-ILSNFKD-EMTIPPKFATNFRGR--ISDEVKLEVPDGKIYNVQV--AEEQHKLVLRSGWANFAGAYELKEGDLLVFTYSGDSH 375
                            5555.3444554.59*******888766..6779***************..999999****************************999 PP

                            E..EEEEE-S CS
                     B3  90 felvvkvfrk 99 
                            f  +vk+f+ 
  Traes_5DS_7E44031E8.1 376 F--KVKIFKP 383
                            9..9999975 PP
4B346.66e-15506597494
                            E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            + +++ +l+ g lv+ k++a +h   ++++++++l + +++++W+ +l + + + ++  ++lt+GW +Fv++n+L+egD++ F+++++
  Traes_5DS_7E44031E8.1 506 TAMNEKTLSDGYLVICKDYAVKHL--PHQDQMIKLCHpQNSKTWDANLAViSDGACTlsCILTAGWLGFVRDNNLREGDICAFEVSKN 591
                            567899999**************5..346779999994556*******66544444467*************************9876 PP

                            .SEE..EE CS
                     B3  88 .sefelvv 94 
                             s+   ++
  Traes_5DS_7E44031E8.1 592 dSRV--MI 597
                            3433..44 PP
5B342.21.4e-136717561598
                            -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                     B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                             l++   +a+ h ++ +e++ ++l+   ++ +W+ kl +  + +++   l++GWk+ vk+n+L+egD+++F+l ++ +e +++v++++
  Traes_5DS_7E44031E8.1 671 SLYIEQGYADCH-LP-REDQIMRLRLpGKNDTWKAKLYVgdKVNGKFNALRRGWKKLVKDNKLQEGDMCLFELLKNeEELTMNVHIIK 756
                            467777777444.33.345567777734569******55877777779************************99888******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.26E-1225111No hitNo description
SMARTSM010195.1E-427113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-1529115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1533115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.75637113IPR003340B3 DNA binding domain
PfamPF023621.3E-937111IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-19133228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.253134227IPR003340B3 DNA binding domain
CDDcd100174.52E-18134225No hitNo description
Gene3DG3DSA:2.40.330.101.1E-19135227IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-11136227IPR003340B3 DNA binding domain
PfamPF023625.8E-16138225IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-23286386IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-23287386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.253291384IPR003340B3 DNA binding domain
CDDcd100171.66E-21291382No hitNo description
SMARTSM010195.8E-15293384IPR003340B3 DNA binding domain
PfamPF023621.3E-15293382IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-17497598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-17497599IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52503603IPR003340B3 DNA binding domain
SMARTSM010192.4E-7504603IPR003340B3 DNA binding domain
PfamPF023623.8E-12506597IPR003340B3 DNA binding domain
CDDcd100172.84E-12512601No hitNo description
Gene3DG3DSA:2.40.330.103.5E-17653756IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-16655756IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998657757IPR003340B3 DNA binding domain
CDDcd100171.57E-11659756No hitNo description
SMARTSM010195.8E-9661754IPR003340B3 DNA binding domain
PfamPF023622.2E-12671756IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MKTSFTSCNE CVVYHNWHRM GDWKKCFVKI VGEFVDVPIN LANYIRGQIP DKVKLEVPDG  60
KTYNVQVSKE ENGLVFQSGW AEFARTYELV QGTILLFESS GSSCFEVRMF NQTGCEKELS  120
CVPMNNTPCV NKMRFFMVMM GIGASNNGLT IPEKFANYVR GHISEEIKLE VPDGQTYSVQ  180
VDNEQNELVL LSGWDTFVSA YELKEGDTLL FGYNGNSQFK VRIFNVNGFD KLLSCVVKNI  240
TPCVQKRSAY HDNPLQSPRE RTGPNDHRNK ACTICIECVG RHYWHMEDHN WSFFKVVILS  300
NFKDEMTIPP KFATNFRGRI SDEVKLEVPD GKIYNVQVAE EQHKLVLRSG WANFAGAYEL  360
KEGDLLVFTY SGDSHFKVKI FKPSGCENEF SCVTMSCGSN VQERDICHDQ SLPTKKRCRN  420
DGLTDSWKTT KKTPTDSPSQ KPSSELNTED VTSSKDIQEP RGSGVLQGSS ESRYILEMSC  480
KLTSAQRARV DTFVKESQTG IEFYVTAMNE KTLSDGYLVI CKDYAVKHLP HQDQMIKLCH  540
PQNSKTWDAN LAVISDGACT LSCILTAGWL GFVRDNNLRE GDICAFEVSK NDSRVMITVH  600
PLKESGHPEY VITGHTKPAS QQKKKWTHPG YVVARSIKLT RKQKRKIEER IQAIRPEIKI  660
FVSVLQRSSY SLYIEQGYAD CHLPREDQIM RLRLPGKNDT WKAKLYVGDK VNGKFNALRR  720
GWKKLVKDNK LQEGDMCLFE LLKNEEELTM NVHIIKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161804.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020161805.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A3B6MLS40.0A0A3B6MLS4_WHEAT; Uncharacterized protein
STRINGTraes_5DS_7E44031E8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]