PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_675BEBC7B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 1076aa    MW: 116796 Da    PI: 6.3571
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_675BEBC7B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-151712541499
                            T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            + +++pk++a+ h   ++es t+tl++  ++++W  ++   kk+ ++ lt+ W +Fv++n++ egD+++F   +  + f ++v+++rk
  Traes_5DS_675BEBC7B.2 171 SYVTIPKEYAAVHF--PPESATITLRSpGKNKKWHPRF--YKKGTMIKLTGSWLHFVRDNDVHEGDICIFVPAKGgKPFMFTVHLLRK 254
                            4589******9998..45789******5566*******..9999***************************77655999999999987 PP
2B351.51.8e-16311406399
                            EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                     B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                            +++t+s+ ++++ + l+k++a+eh   +++++tl+++   g+ W++++ +  rk+++r +l +GW++F ++n L+ gD+++F+l+++ 
  Traes_5DS_675BEBC7B.2 311 SIMTKSNLGSRH-MELSKRYAAEHL--PHRNVTLMFQY-MGKIWNINMLFhdRKYPKRWYLIGGWSKFISDNSLRLGDICLFELKKDe 394
                            567777777777.***********5..34677888776.9********9999******99999**********************998 PP

                            SEE..EEEEE-S CS
                     B3  88 sefelvvkvfrk 99 
                            +e +  v+++rk
  Traes_5DS_675BEBC7B.2 395 KELTVIVHLLRK 406
                            999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-18153254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-19155254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956158255IPR003340B3 DNA binding domain
CDDcd100178.14E-17161253No hitNo description
SMARTSM010194.4E-9161255IPR003340B3 DNA binding domain
PfamPF023625.8E-13171254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19301401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20303411IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-19307402No hitNo description
PROSITE profilePS5086312.012308407IPR003340B3 DNA binding domain
SMARTSM010192.1E-14309407IPR003340B3 DNA binding domain
PfamPF023622.4E-13310406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MYQTPPYPGA AEGAVPSSLM DTPLTEERRA ARRVRRRVCS SGSPTSLNHG ESDDAQEMST  60
NSTEISSSDC YTQLSSESSD EGCENRSSGH RRKRRKTSVI SSASEQSGQD SPSACESLES  120
DDVQITPGKD YVLPQRCDLS DAEKNRVVAL IKEIKAKVTV FVAIMLRSYS SYVTIPKEYA  180
AVHFPPESAT ITLRSPGKNK KWHPRFYKKG TMIKLTGSWL HFVRDNDVHE GDICIFVPAK  240
GGKPFMFTVH LLRKETTDSQ TEVSHESSEC EDSHGQPPYI LPYGARLSPS QRSAVKKKVD  300
SIQSEVPIYV SIMTKSNLGS RHMELSKRYA AEHLPHRNVT LMFQYMGKIW NINMLFHDRK  360
YPKRWYLIGG WSKFISDNSL RLGDICLFEL KKDEKELTVI VHLLRKESID HPSGVSPVLD  420
SNYVRASTMI ASTVHVGEEP DDEEETASSG REEQGFDDEP IEHNYSEGAS KAHMPTAPCS  480
ESNASGISPS PEAREQAAGC SNKSFATEFP NKPSSTMEHN RIIHTDRAAA SEVIGLSDYR  540
IHNSCDSIDS QGGESLAVQQ QSSPSPGIGN SVNPDSSSGD HRSAERVEGE SDVALQSLVR  600
VTGQQVGDAE KEVNASGGEN SLADLPHLEP QNVAAVPSQA ALPMPKEKTD TQTNRSAQPD  660
VAQAQPPQGE VEQAGLSGVA SPQPLQPAQL AQGEAEQDLS GVASPSQPET RPSISGFVET  720
RSNLVTQSVE QSIAPVQFPQ EQAGLSGVAS AQPLVPEMQP STPLSNIPLE RAHPNRGQSS  780
RQPEAAAGSA QPAQLFPAPS MMFNHPPIGD EPLKNELHRL RLHIDSLDKI YELKQSQLQT  840
ECSQEIEKIK QKYDLLLEEQ DSVHLEQMKT LDGLLEKVVF HQSLAADFRA KFISPSAAQA  900
KAYSRPIHQT PQASQQAPMR PPGMTSTSPP AAWSSAGRPV VPGGAQPSQV DRPSTPASSQ  960
APRPPLPSTP VVRLPINPGN LVRTTGAPMP RVPPRGSHGV PSAPAPHLQC RLPPRAHSTA  1020
PANQRQQQHA TSVSPQSSHA VPPVSSSPLP PSSSQATHHG SSTRMDVDVV CLSDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151567.10.0uncharacterized protein LOC109736772
TrEMBLA0A3B6MMH30.0A0A3B6MMH3_WHEAT; Uncharacterized protein
STRINGTraes_5DS_675BEBC7B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-09B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]