PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_F38B6F5C2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 536aa    MW: 59906.4 Da    PI: 6.8121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_F38B6F5C2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-12511311499
                            T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + l++p +  ++  +++ + s  ++le+++gr+++vk+   k  gr++lt+GW++Fv+an+++e+  ++F + g+s+f  +v++f++
  Traes_5DL_F38B6F5C2.1  51 DHLCIPWEVSSQLrDMI-PDSEPIKLETPDGRTYSVKF--FK-FGRITLTTGWRGFVDANHIEENNPMLFVYRGNSTF--KVQIFNS 131
                            34788888776666333.35567***************..44.46799************************999999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.75838132IPR003340B3 DNA binding domain
SMARTSM010191.5E-739132IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1644132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-1446133IPR015300DNA-binding pseudobarrel domain
CDDcd100179.44E-1250130No hitNo description
PfamPF023625.2E-1051131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-13192292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-12192292IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-8197289No hitNo description
SMARTSM010190.011199291IPR003340B3 DNA binding domain
PROSITE profilePS508638.628200291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11411532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-10418525IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-8421522No hitNo description
SMARTSM010190.013423524IPR003340B3 DNA binding domain
PROSITE profilePS508638.388423524IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDMGELFNPX XGGAGGAGCD CGDCEEWRRY CYWNHDHGTK QFLLFASDDK DHLCIPWEVS  60
SQLRDMIPDS EPIKLETPDG RTYSVKFFKF GRITLTTGWR GFVDANHIEE NNPMLFVYRG  120
NSTFKVQIFN SSGRDKFLPC SQPPCNHHVL NEQVVPHPGH VDSSAHFGYT MLPGSFVTKA  180
QDDKLLEWAN TIKSEFPLFV AAMDESNVSL SDCHVYIPLS LVGQFKEEVV KIVALDKSIY  240
VVGAKKHNED QIVLQSGWHR FVASQCIQQN DFLIFIIEGE ARLKVLVLDP SGSEKTFAMG  300
NSSNAQEKPP LPPTVTNQSS DNELTDLSSD YEVLGKDTTT SRREQRPLRS CRAKAEKMGS  360
TSCPSTKSDH RHKAGNSNEA GIEAPMPNKS YIVPQAGATK LTVQQEEKVK EKVRAIGSEF  420
PVFVKVMTAY DVSKMAHLAF CMEYASACRL PLEQTPLLLR LEGSNMRWSS ALMIQQNNNV  480
RRICSFWQDI VSQAGTKEGD ILLVELAGRS SRRLRMTVHL IRKSECSSSS CSQASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170063.10.0B3 domain-containing protein Os12g0591400-like isoform X2
TrEMBLA0A3B6MXG00.0A0A3B6MXG0_WHEAT; Uncharacterized protein
TrEMBLA0A453LMF10.0A0A453LMF1_AEGTS; Uncharacterized protein
STRINGTraes_5DL_F38B6F5C2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-09B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]