PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5DL_F269EF70D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 14530.8 Da PI: 10.3996 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sF++ L H +H Traes_5DL_F269EF70D.1 40 FVCKTCGRSFPSFQALGGHRTSH 62 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Traes_5DL_F269EF70D.1 91 HQCHVCGLEFELGQALGGHMRRH 113 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.3E-11 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.17E-7 | 40 | 113 | No hit | No description |
PROSITE profile | PS50157 | 10.408 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.086 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-9 | 90 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MVSSMKHCRD QAEVPLSLSL SLGVVADRNK KMRRSADGEF VCKTCGRSFP SFQALGGHRT 60 SHLRGRHGLA LSLAQGSEPA TKKATKQNLA HQCHVCGLEF ELGQALGGHM RRHREQEATT 120 MAQAPPVLLQ LFV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198420.1 | 2e-93 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 4e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A3B6MZK6 | 4e-92 | A0A3B6MZK6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_F269EF70D.1 | 7e-93 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-22 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|