PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_EF9AFFB3D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 740aa MW: 82012.2 Da PI: 5.8536 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.1 | 6.7e-14 | 195 | 273 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF +r ks+++++ g +++ +C + gk++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH+ Traes_5DL_EF9AFFB3D.2 195 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHA 271 6*********************8777.66789**********98877..........9*****************************9 PP FAR1 89 la 90 ++ Traes_5DL_EF9AFFB3D.2 272 FS 273 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-9 | 195 | 273 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MEFSVEEEPR LSGAPLALGL GEDAMEAVRR AFPGQDFAID VVNRAFGWRN PEERSQQDSS 60 ACGISGACTS EKRVDLEQVE NAGKSCAQQD PSASEMQLRS QEAEQAGQRC DAPPAPADVG 120 AEAGGPPAPA DVGAEAGGGW NRRVRRGRIP DEREPDAQRV SALEKALTGF AERQTDVVVN 180 PTVGTCFDSI TEAYDFYNLY SWEMGFGIRY GKSRRNTKGG KCMQEITCVN AGKPNMGGKS 240 RRCECTALIR LLRTDDNGWY VTQHRKVHNH AFSTTYGNKV HWPSHKHLDK YTRDLVRQLR 300 HNNVNLGVYD TIASFFGRME NVPFNKRSIR TLCGEVIREQ ADDDARKTME TAAASGERPE 360 NHTGEETTFN CMGLASTTVG SPNMPVDPLR YPEQDDTHSN AEAGRLADLL LAFGDCHLVL 420 KSCTYDDLIN SNGTMSGLEE AVKAVTPHLQ QGIFGDLWSR AHNSGGVVSA QVLTIKDLFR 480 FTRWLTTTTG QHNLRCVQQR AKLVNSGKAV LEPEQIALLH LYQAENDEYS VKMNKLQGER 540 DAKIAHYMAK IDEARKSFEV SIQAAKQHYP VSASYVALDS NELRGQCWTM YLAQCRKEAK 600 DLNAKASNIV EKYGPEVIQR HLFEFCSQET NRQALLKYAQ TKVNKLKEAG DAREDTLHDY 660 MTLLDIEKAY ALLAAEEQIA NGPDTCGGNE DADHGNRNNT IARCEAAEGA RGDGQDGGEG 720 ASEGPPRQKR QRNDQDYVWW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358874 | 0.0 | AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188421.1 | 0.0 | uncharacterized protein LOC109774115 | ||||
TrEMBL | A0A453KBI3 | 0.0 | A0A453KBI3_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BIY3 | 0.0 | M8BIY3_AEGTA; Uncharacterized protein | ||||
STRING | Traes_5DL_EF9AFFB3D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 3e-10 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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