PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_BCD584BC0.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 777aa MW: 88394.6 Da PI: 7.1407 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.5 | 9.3e-18 | 11 | 95 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF v+++ks+ + + g + + +vC+++g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++l+HnH+l+ Traes_5DL_BCD584BC0.2 11 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVSLDHNHPLN 94 6*****************9998.6777****************9999.....999*********************************97 PP FAR1 91 p 91 p Traes_5DL_BCD584BC0.2 95 P 95 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-16 | 11 | 95 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.7E-26 | 200 | 292 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 479 | 515 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0041 | 490 | 517 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.0E-5 | 492 | 511 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MVFKSYEEVL NFYKRYALRT GFGVCVKKSS FTKAGLCRRL LLVCNRWGNG KEDACYQARP 60 TAKTNCQATV VARLWGDGML HLTDVSLDHN HPLNPSAARF LRCYKTLPSG MSKDLVVRAA 120 RGECATSGGD VEAPPMFDDW GRLKIREGDV QAINCFFAEM QAKQPNFFYV MDFYVEGHLR 180 SVLWADSRSR EAYQYFSDAI WVDTTCLRSK FNVPLVLFLG VNHHGQLVLL GCGLLSDEST 240 ESFLWLFKAW LTCMKGRLPG AMITDESVAI KAAVREVFPK TRHRISDWHI VRSIAEKLGE 300 LPEYESIKVQ MEAVIYGSLK DDQFETRWKN LINRFGLQDN EWIIFLYENR HLWVPSFLKD 360 AFWAGLSVNH RESPGAFFDG SVSHETTLVS FLSNYMILVQ YKYKMEQQDD FESLTSGRVL 420 VSKFPMEEQI SKLYTLNMFV KFQDELKSTL DCQVQQVSPS SFVVIDLAEQ GTGLVTRKYE 480 VVHCMETNRM ECNCGLFQFS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS DFKQLHALDN 540 PLKDPLVSSN HVERYDHISL QCLRLVEIGM VSDDKYQHAL KLISDMKRTL LDDNLCRELE 600 QKMSPPERAI VVNGDSHAQP GSSEGGPAKK RRGRPPKKSK EISAESVSNQ CGNKESLLVS 660 SDVSQKGALH SSSTASNLGT HVRAHGVDDL MEEVNANEVS FESRYGVQSS HPNHYGDQLH 720 PGHTLQFGQH ISAEQSRGVE WVYPTIYQVP DDEMYRGVRE AASWRRPPPQ DVLASSI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178274.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A453MGV0 | 0.0 | A0A453MGV0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_BCD584BC0.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-117 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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