PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_91AE6CA271.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 31779.6 Da PI: 12.3273 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.4e-16 | 94 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + rWv+e+r+p ++g +r +lg++ tae Aa+a +aa+++l g Traes_5DL_91AE6CA271.3 94 PVYRGVRRRGNAERWVCEVRVPGKRG--ARLWLGTYATAEVAARANDAAMLALGG 146 68*******************95544..***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-12 | 94 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-15 | 95 | 156 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-24 | 95 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.244 | 95 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-14 | 95 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-18 | 96 | 157 | No hit | No description |
PRINTS | PR00367 | 5.0E-5 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSIPHSRSSS TSISQLAHGL TLLTELNHQA RLLKKKATCQ SPSTLPVAMD MGLEVSSSSP 60 SSSSVSSSPV HAAGRASLAK RPAGRTKFRE TRHPVYRGVR RRGNAERWVC EVRVPGKRGA 120 RLWLGTYATA EVAARANDAA MLALGGRSAA CLNFADSAWL LAVPPALSDL GDXXXXXXXX 180 XXXXXXXXPS PPPSPKRPPV ALLKNRRLSL TVPVRRRRRN LLPMQSSRCL SQWTPICSVG 240 LTCSRKWTCA RTTRASRRRC SWTRRRRWPS STRTGTTATT ELMSRSGATS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF028760 | 0.0 | EF028760.1 Triticum aestivum CBFIIIc-D3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A453LD99 | 1e-116 | A0A453LD99_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_91AE6CA271.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-29 | dehydration response element B1A |
Publications ? help Back to Top | |||
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