PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_62A4CE1CC.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 275aa MW: 29341.6 Da PI: 8.7123

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_62A4CE1CC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.3	1.5e-16	41	92	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ + g+Wv+e+r+p g k r +lg+f tae+Aa+a++aa ++l g Traes_5DL_62A4CE1CC.2 41 LYRGVRQRGRVGQWVCEVRVP---GvKGSRLWLGTFTTAEMAARAHDAAVLALSG 92 69****************9...8777*******************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.5E-10	40	91	IPR001471	AP2/ERF domain
CDD	cd00018	1.03E-22	40	102	No hit	No description
SMART	SM00380	9.3E-22	41	106	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-28	41	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.679	41	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-18	41	102	IPR016177	DNA-binding domain
PRINTS	PR00367	3.2E-5	42	53	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-5	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDVADAASPS GQDQQGHRTV SSEPPKRPAG RTKVHETRHP LYRGVRQRGR VGQWVCEVRV 60 PGVKGSRLWL GTFTTAEMAA RAHDAAVLAL SGRAACLNFA DSAWRMLPVL APGSFGFGSA 120 REIKAAVAVA VVAFKKQQII PVAVAVVALQ KQQIIPVAVA VVALQKQQIP VAVALVALQE 180 KQIPVAVAVV ALHRQQVPVD DPATSGPGSA LFYMSSSDLL ELDEEQWFGG MDAGSYYASL 240 AQGMLVAPPD ERARPEDGEQ SGVQTPLWSQ SHLFN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF028787	0.0	EF028787.1 Triticum aestivum CBFIVd-D22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167760.1	0.0	dehydration-responsive element-binding protein 1B-like
Swissprot	Q8GUW4	2e-47	DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBL	A0A453LD29	0.0	A0A453LD29_AEGTS; Uncharacterized protein
TrEMBL	A0MPM5	0.0	A0MPM5_WHEAT; CBFIVd-D22
STRING	Traes_5DL_62A4CE1CC.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	5e-25	dehydration response element B1A

Publications ? help Back to Top
Badawi M,Danyluk J,Boucho B,Houde M,Sarhan F The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs. Mol. Genet. Genomics, 2007. 277(5): p. 533-54 [PMID:17285309] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]