PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_5FD3B95C7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 413aa    MW: 45670 Da    PI: 7.4372
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_5FD3B95C7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-093303642155
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Traes_5DL_5FD3B95C7.1 330 KWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 364
                            569*****************************885 PP
2ELK439e-15284305122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKhqLlrKY+gy gsL+qEF+
  Traes_5DL_5FD3B95C7.1 284 ELKHQLLRKYGGYVGSLRQEFC 305
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-20151195IPR005540KNOX1
PfamPF037905.7E-22152193IPR005540KNOX1
SMARTSM012564.8E-28201252IPR005541KNOX2
PfamPF037915.0E-24205251IPR005541KNOX2
PROSITE profilePS5121311.453284304IPR005539ELK domain
SMARTSM011889.7E-8284305IPR005539ELK domain
PfamPF037891.2E-10284305IPR005539ELK domain
PROSITE profilePS5007112.795304367IPR001356Homeobox domain
SMARTSM003893.0E-13306371IPR001356Homeobox domain
SuperFamilySSF466893.94E-19306375IPR009057Homeodomain-like
CDDcd000864.07E-14307367No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27309370IPR009057Homeodomain-like
PfamPF059202.5E-16324363IPR008422Homeobox KN domain
PROSITE patternPS000270342365IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGTKPIPSHQ PHTHSLIIHS PSGLLLLLSS SVRPPPSFVL HHFSSFQERV HLISFLVRVS  60
WPCLFLIGRF SAQIMERFPN LGGGGGSGSG SSSASMASFL QLPPPSASSP SPELAGEQHG  120
SRLALQQLLA APPPSAQQQQ QRREISPADV ATIKAKIMAH PLYSPLLASY LDCQKVGAPP  180
EVLERLSAVA AKLDAGHGRG KHESPRPDPE LDQFMEAYCN MLAKYREELA RPIQEATEFF  240
KSVETQLDSI TFTDSTNCEG AGSSEDELDT SCVEEIDPSA EDKELKHQLL RKYGGYVGSL  300
RQEFCKRRKK GKLPKEARQK LLHWWELHSK WPYPSETEKI ALAESTGLDQ KQINNWFINQ  360
RKRHWKPAPE DMPFSVMDGG VGVGVSFLPA PQGPALYMDR APFMVDGMYR LGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434550.0AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156617.10.0homeobox protein rough sheath 1-like
SwissprotO650341e-116KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-116KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A3B6MZX20.0A0A3B6MZX2_WHEAT; Uncharacterized protein
STRINGTraes_5DL_5FD3B95C7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-95KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]
  7. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]